5BYG
X-ray structure of AAV2 OBD-AAVS1 complex 2:1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Origin of replication-binding domain RBD-like | 8100084 | 3001937 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Replication protein Rep nuclease domain | 8100083 | 4002726 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Origin of replication-binding domain RBD-like | 8100084 | 3001937 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Origin of replication-binding domain RBD-like | 8100084 | 3001937 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Origin of replication-binding domain RBD-like | 8100084 | 3001937 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08724 | e5bygA1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PF08724 | ECOD (1.6) |
B | PF08724 | e5bygB1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PF08724 | ECOD (1.6) |
C | PF08724 | e5bygC1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PF08724 | ECOD (1.6) |
D | PF08724 | e5bygD1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: PF08724 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1310.20 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
B | 3.40.1310.20 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
C | 3.40.1310.20 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
D | 3.40.1310.20 | Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01057 | Parvovirus non-structural protein NS1 (Parvo_NS1) | Parvovirus non-structural protein NS1 | This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a differen ... | Domain | |
PF08724 | Rep protein catalytic domain like (Rep_N) | Rep protein catalytic domain like | Adeno-associated virus (AAV) Replication (Rep) protein is essential for viral replication and integration. The catalytic domain has DNA binding and endonuclease activity. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014835 | NS1 nuclease, NS1-Nuc domain, parvovirinae | Domain | |
IPR014015 | Helicase, superfamily 3, DNA virus | Domain | |
IPR001257 | Parvovirus non-structural protein 1, helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |