5BW0
The crystal structure of minor pseudopilin binary complex of XcpV and XcpW from the Type 2 secretion system of Pseudomonas aeruginosa
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5bw0a_ | Alpha and beta proteins (a+b) | Pili subunits | Pili subunits | automated matches | automated matches | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
C | d5bw0c1 | Alpha and beta proteins (a+b) | Pili subunits | Pili subunits | automated matches | automated matches | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
E | d5bw0e_ | Alpha and beta proteins (a+b) | Pili subunits | Pili subunits | automated matches | automated matches | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
G | d5bw0g_ | Alpha and beta proteins (a+b) | Pili subunits | Pili subunits | automated matches | automated matches | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Pili subunits | 8086738 | 3000097 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Pili subunits | 8086738 | 3000097 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Pili subunits | 8086738 | 3000097 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Pili subunits | 8086738 | 3000097 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF11612 | e5bw0A1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: PF11612 | ECOD (1.6) |
C | PF11612 | e5bw0C1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: PF11612 | ECOD (1.6) |
E | PF11612 | e5bw0E1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: PF11612 | ECOD (1.6) |
G | PF11612 | e5bw0G1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: PF11612 | ECOD (1.6) |
F | PF02501 | e5bw0F1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: PF02501 | ECOD (1.6) |
H | PF02501 | e5bw0H1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: PF02501 | ECOD (1.6) |
B | PF02501 | e5bw0B1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: PF02501 | ECOD (1.6) |
D | PF02501 | e5bw0D1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: PF02501 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
F | 3.30.1300.30 | Alpha Beta | 2-Layer Sandwich | Pantoate--beta-alanine Ligase | Chain: A,domain 2 | CATH (4.3.0) |
H | 3.30.1300.30 | Alpha Beta | 2-Layer Sandwich | Pantoate--beta-alanine Ligase | Chain: A,domain 2 | CATH (4.3.0) |
B | 3.30.1300.30 | Alpha Beta | 2-Layer Sandwich | Pantoate--beta-alanine Ligase | Chain: A,domain 2 | CATH (4.3.0) |
D | 3.30.1300.30 | Alpha Beta | 2-Layer Sandwich | Pantoate--beta-alanine Ligase | Chain: A,domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11612 | Type II secretion system (T2SS), protein J (T2SSJ) | Type II secretion system (T2SS), protein J | - | Family | |
PF02501 | Type II secretion system (T2SS), protein I (T2SSI) | Type II secretion system (T2SS), protein I | The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. As me ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010055 | Type II secretion system protein GspJ | Family | |
IPR012902 | Prokaryotic N-terminal methylation site | PTM | |
IPR045584 | Pilin-like | Homologous Superfamily | |
IPR003413 | Type II secretion system protein GspI, C-terminal | Domain | |
IPR012902 | Prokaryotic N-terminal methylation site | PTM | |
IPR010052 | Type II secretion system protein GspI | Family | |
IPR045584 | Pilin-like | Homologous Superfamily |