5ABB
Visualization of a polytopic membrane protein during SecY-mediated membrane insertion
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00344 | e5abbA1 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: PF00344 | ECOD (1.6) |
B | PF00584 | e5abbB1 | A: extended segments | X: Preprotein translocase SecE subunit (From Topology) | H: Preprotein translocase SecE subunit (From Topology) | T: Preprotein translocase SecE subunit | F: PF00584 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00344 | SecY (SecY) | SecY | - | Family | |
PF00584 | SecE/Sec61-gamma subunits of protein translocation complex (SecE) | SecE/Sec61-gamma subunits of protein translocation complex | - | Family | |
C [auth Z] | PF01036 | Bacteriorhodopsin-like protein (Bac_rhodopsin) | Bacteriorhodopsin-like protein | The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [2,3]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, th ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002208 | SecY/SEC61-alpha family | Family | |
IPR030659 | SecY conserved site | Conserved Site | |
IPR023201 | SecY domain superfamily | Homologous Superfamily | |
IPR026593 | Protein translocase subunit SecY | Family | |
IPR005807 | SecE subunit of protein translocation complex, bacterial-like | Family | |
IPR001901 | Protein translocase complex, SecE/Sec61-gamma subunit | Family | |
IPR038379 | SecE superfamily | Homologous Superfamily | |
C [auth Z] | IPR017402 | Proteorhodopsin | Family |
C [auth Z] | IPR018229 | Rhodopsin, retinal binding site | Binding Site |
C [auth Z] | IPR001425 | Archaeal/bacterial/fungal rhodopsins | Family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |