Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth I]SCOP2 FamilyRibosomal protein S8e8048714 4006189 SCOP2 (2022-06-29)
K [auth I]SCOP2 Superfamily50S Ribosomal protein L14-like8053077 3000433 SCOP2 (2022-06-29)
M [auth K]SCOP2B SuperfamilyWinged helix DNA-binding domain8055714 3000034 SCOP2B (2022-06-29)
N [auth L]SCOP2 FamilyCold shock DNA-binding domain-like8052716 4001909 SCOP2 (2022-06-29)
N [auth L]SCOP2 FamilyRibosomal S17 N-terminal domain-like8045079 4004290 SCOP2 (2022-06-29)
N [auth L]SCOP2 SuperfamilyNucleic acid-binding proteins8052717 3000135 SCOP2 (2022-06-29)
N [auth L]SCOP2 SuperfamilyRibosomal S17 N-terminal domain-like8052715 3002138 SCOP2 (2022-06-29)
O [auth M]SCOP2B SuperfamilyL30e-like8063978 3001739 SCOP2B (2022-06-29)
P [auth N]SCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S138052957 4000767 SCOP2 (2022-06-29)
P [auth N]SCOP2 Family40S Ribosomal protein S13 N-terminal domain-like8050312 4006843 SCOP2 (2022-06-29)
P [auth N]SCOP2 SuperfamilyS15/NS1 RNA-binding domain8052959 3001284 SCOP2 (2022-06-29)
P [auth N]SCOP2 SuperfamilyHomeodomain-like8052958 3000001 SCOP2 (2022-06-29)
Q [auth O]SCOP2B SuperfamilyTranslational machinery components8098844 3000571 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082685 3000100 SCOP2B (2022-06-29)
U [auth S]SCOP2B SuperfamilyS13-like H2TH domain8101555 3000053 SCOP2B (2022-06-29)
V [auth T]SCOP2B SuperfamilyWinged helix DNA-binding domain8089318 3000034 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyRibosomal protein S108098806 3001336 SCOP2B (2022-06-29)
X [auth V]SCOP2 FamilyRibosomal protein S21e8048775 4006215 SCOP2 (2022-06-29)
X [auth V]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053139 3000068 SCOP2 (2022-06-29)
Y [auth W]SCOP2B SuperfamilyRibosomal protein S88095469 3000709 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyWinged helix DNA-binding domain8090992 3000034 SCOP2B (2022-06-29)
CA [auth a]SCOP2 FamilyRibosomal protein S26e8048843 4006236 SCOP2 (2022-06-29)
CA [auth a]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053143 3000068 SCOP2 (2022-06-29)
C [auth A]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8052791 3001397 SCOP2B (2022-06-29)
EA [auth c]SCOP2B SuperfamilyNucleic acid-binding proteins8063426 3000135 SCOP2B (2022-06-29)
FA [auth d]SCOP2 FamilyRibosomal protein S14p/S29e8047574 4003647 SCOP2 (2022-06-29)
FA [auth d]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052572 3000068 SCOP2 (2022-06-29)
GA [auth e]SCOP2 FamilyRibosomal protein S30e-like8046411 4005067 SCOP2 (2022-06-29)
GA [auth e]SCOP2 SuperfamilyRibosomal protein S30e-like8053453 3002190 SCOP2 (2022-06-29)
D [auth B]SCOP2B SuperfamilyRibosomal S3Ae-like8053212 3002166 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II)8043545 3001043 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyNucleic acid-binding proteins8052756 3000135 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052757 3000334 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052755 3001473 SCOP2B (2022-06-29)
H [auth F]SCOP2 FamilyRibosomal protein S78066002 4001112 SCOP2 (2022-06-29)
H [auth F]SCOP2 SuperfamilyRibosomal protein S78066003 3000799 SCOP2 (2022-06-29)
I [auth G]SCOP2B SuperfamilyGS N-terminal domain-like8053171 3000408 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth H]PF01251e5a2qH2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
K [auth I]PF01201e5a2qI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
L [auth J]PF00163,PF01479e5a2qJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
M [auth K]PF03501e5a2qK1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
N [auth L]PF00366,PF16205e5a2qL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
O [auth M]PF01248e5a2qM1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
P [auth N]PF08069e5a2qN2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
P [auth N]PF00312e5a2qN1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
Q [auth O]PF00411e5a2qO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
R [auth P]PF00203e5a2qP1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
S [auth Q]PF00380e5a2qQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
T [auth R]PF00833e5a2qR1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
U [auth S]PF00416e5a2qS1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
V [auth T]PF01090e5a2qT1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
W [auth U]PF00338e5a2qU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
X [auth V]PF01249e5a2qV1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
Y [auth W]PF00410e5a2qW1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
Y [auth W]PF00410e5a2qW2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
Z [auth X]PF00164e5a2qX1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
AA [auth Y]PF01282e5a2qY1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
BA [auth Z]PF03297e5a2qZ1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
CA [auth a]PF01283e5a2qa1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
C [auth A]PF00318e5a2qA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
DA [auth b]PF01667e5a2qb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
EA [auth c]PF01200e5a2qc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
FA [auth d]PF00253e5a2qd1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
GA [auth e]PF04758e5a2qe1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
HA [auth f]PF01599e5a2qf1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
IA [auth g]PF00400e5a2qg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
JA [auth h]PF05162e5a2qh1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
D [auth B]PF01015e5a2qB2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
D [auth B]PF01015e5a2qB1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
E [auth C]PF03719e5a2qC3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
E [auth C]PF00333e5a2qC2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
E [auth C]PF00333e5a2qC4 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
F [auth D]PF00189e5a2qD1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
F [auth D]PF07650e5a2qD2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
G [auth E]PF00900e5a2qE1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
G [auth E]PF00467,PF16121e5a2qE2 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
G [auth E]PF00900,PF01479,PF08071e5a2qE3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
H [auth F]PF00177e5a2qF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
I [auth G]PF01092e5a2qG1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
K [auth I]1.10.168.20 Mainly Alpha Orthogonal Bundle Phosducin domain 2CATH (4.3.0)
M [auth K]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
N [auth L]2.40.50.1000 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) CATH (4.3.0)
O [auth M]3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
P [auth N]1.10.287.10 Mainly Alpha Orthogonal Bundle Helix Hairpins S15/NS1, RNA-bindingCATH (4.3.0)
Q [auth O]3.30.420.80 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
S [auth Q]3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
T [auth R]1.10.60.20 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor domain 2CATH (4.3.0)
U [auth S]1.10.8.50 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
W [auth U]3.30.70.600 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Ribosomal protein S10CATH (4.3.0)
X [auth V]3.30.1230.20 Alpha Beta 2-Layer Sandwich Hypothetical Cytosolic Protein Chain: ACATH (4.3.0)
Y [auth W]3.30.1370.30 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)
Y [auth W]3.30.1490.10 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1CATH (4.3.0)
AA [auth Y]3.30.70.3370 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
BA [auth Z]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
CA [auth a]3.30.1740.20 Alpha Beta 2-Layer Sandwich first zn-finger domain of poly(adp-ribose) polymerase-1 Ribosomal protein S26CATH (4.3.0)
C [auth A]3.40.50.10490 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glucose-6-phosphate isomerase like proteinCATH (4.3.0)
DA [auth b]2.20.25.100 Mainly Beta Single Sheet N-terminal domain of TfIIb Ribosomal protein S27CATH (4.3.0)
FA [auth d]4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14 Chain NCATH (4.3.0)
HA [auth f]6.20.50.150 Special Other non-globular N-terminal domain of TfIIb CATH (4.3.0)
IA [auth g]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
LA [auth w]6.10.250.1270 Special Helix non-globular Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
E [auth C]3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
E [auth C]3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
F [auth D]3.30.300.20 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3CATH (4.3.0)
F [auth D]3.30.1140.32 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain Ribosomal protein S3, C-terminal domainCATH (4.3.0)
G [auth E]3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region Chain ACATH (4.3.0)
G [auth E]2.40.50.740 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Ribosomal protein S4, central domainCATH (4.3.0)
G [auth E]2.30.30.30 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
H [auth F]1.10.455.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal protein S7/S5CATH (4.3.0)
I [auth G]1.20.5.2650 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth H]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
K [auth I]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
L [auth J]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
L [auth J]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
M [auth K]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
N [auth L]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
N [auth L]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
O [auth M]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
P [auth N]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
P [auth N]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
Q [auth O]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
R [auth P]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
S [auth Q]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
T [auth R]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
U [auth S]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
V [auth T]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
W [auth U]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
X [auth V]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
Y [auth W]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
Z [auth X]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
AA [auth Y]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
BA [auth Z]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
CA [auth a]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
C [auth A]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C [auth A]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
DA [auth b]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
EA [auth c]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
FA [auth d]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
GA [auth e]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
HA [auth f]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
IA [auth g]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth h]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
D [auth B]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
E [auth C]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
E [auth C]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
F [auth D]PF07650KH domain (KH_2)KH domain- Domain
F [auth D]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
G [auth E]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
G [auth E]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
G [auth E]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
G [auth E]PF00467KOW motif (KOW)KOW motif- Family
H [auth F]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
I [auth G]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]18S RRNA---
J [auth H]RIBOSOMAL PROTEIN ES7
K [auth I]RIBOSOMAL PROTEIN ES8
L [auth J]RIBOSOMAL PROTEIN US4
M [auth K]RIBOSOMAL PROTEIN ES10
N [auth L]RIBOSOMAL PROTEIN US17
O [auth M]RIBOSOMAL PROTEIN ES12
P [auth N]RIBOSOMAL PROTEIN US15
Q [auth O]RIBOSOMAL PROTEIN US11
R [auth P]RIBOSOMAL PROTEIN US19
S [auth Q]RIBOSOMAL PROTEIN US9
B [auth 3]HCV IRES---
T [auth R]RIBOSOMAL PROTEIN ES17
U [auth S]RIBOSOMAL PROTEIN US13
V [auth T]RIBOSOMAL PROTEIN ES19
W [auth U]RIBOSOMAL PROTEIN US10
X [auth V]RIBOSOMAL PROTEIN ES21
Y [auth W]RIBOSOMAL PROTEIN US8
Z [auth X]RIBOSOMAL PROTEIN US12
AA [auth Y]RIBOSOMAL PROTEIN ES24
BA [auth Z]RIBOSOMAL PROTEIN ES25
CA [auth a]RIBOSOMAL PROTEIN ES26
C [auth A]RIBOSOMAL PROTEIN US2
DA [auth b]RIBOSOMAL PROTEIN ES27
EA [auth c]RIBOSOMAL PROTEIN ES28
FA [auth d]RIBOSOMAL PROTEIN US14
GA [auth e]RIBOSOMAL PROTEIN ES30
HA [auth f]RIBOSOMAL PROTEIN ES31
IA [auth g]RIBOSOMAL PROTEIN RACK1
JA [auth h]RIBOSOMAL PROTEIN EL41
KA [auth r]RIBOSOMAL PROTEIN EL19
LA [auth w]RIBOSOMAL PROTEIN EL24
D [auth B]RIBOSOMAL PROTEIN ES1
E [auth C]RIBOSOMAL PROTEIN US5
F [auth D]RIBOSOMAL PROTEIN US3
G [auth E]RIBOSOMAL PROTEIN ES4
H [auth F]RIBOSOMAL PROTEIN US7
I [auth G]RIBOSOMAL PROTEIN ES6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth H]IPR000554Small ribosomal subunit protein eS7Family
J [auth H]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
K [auth I]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
K [auth I]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
K [auth I]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
K [auth I]IPR001047Small ribosomal subunit protein eS8Family
L [auth J]IPR002942RNA-binding S4 domainDomain
L [auth J]IPR022801Small ribosomal subunit protein uS4Family
L [auth J]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
L [auth J]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
L [auth J]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
L [auth J]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
M [auth K]IPR037447Small ribosomal subunit protein eS10Family
M [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
M [auth K]IPR005326Plectin/eS10, N-terminalDomain
N [auth L]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
N [auth L]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
N [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth L]IPR000266Small ribosomal subunit protein uS17Family
N [auth L]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
O [auth M]IPR000530Small ribosomal subunit protein eS12Family
O [auth M]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
O [auth M]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
O [auth M]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
P [auth N]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
P [auth N]IPR000589Small ribosomal subunit protein uS15Family
P [auth N]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
P [auth N]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
Q [auth O]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
Q [auth O]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
Q [auth O]IPR001971Small ribosomal subunit protein uS11Family
R [auth P]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
R [auth P]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
R [auth P]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
R [auth P]IPR002222Small ribosomal subunit protein uS19Family
S [auth Q]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
S [auth Q]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
S [auth Q]IPR000754Small ribosomal subunit protein uS9Family
S [auth Q]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
T [auth R]IPR001210Small ribosomal subunit protein eS17Family
T [auth R]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
T [auth R]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
U [auth S]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
U [auth S]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
U [auth S]IPR001892Small ribosomal subunit protein uS13Family
U [auth S]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
V [auth T]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
V [auth T]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
V [auth T]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
V [auth T]IPR001266Small ribosomal subunit protein eS19Family
W [auth U]IPR027486Small ribosomal subunit protein uS10 domainDomain
W [auth U]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
W [auth U]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
W [auth U]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
W [auth U]IPR001848Small ribosomal subunit protein uS10Family
X [auth V]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
X [auth V]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
X [auth V]IPR001931Small ribosomal subunit protein eS21Family
Y [auth W]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
Y [auth W]IPR000630Small ribosomal subunit protein uS8Family
Y [auth W]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
Z [auth X]IPR006032Small ribosomal subunit protein uS12Family
Z [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Z [auth X]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
AA [auth Y]IPR001976Small ribosomal subunit protein eS24Family
AA [auth Y]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
AA [auth Y]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
BA [auth Z]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
BA [auth Z]IPR004977Small ribosomal subunit protein eS25Family
CA [auth a]IPR047864Ribosomal protein eS26, conserved siteConserved Site
CA [auth a]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
CA [auth a]IPR000892Small ribosomal subunit protein eS26Family
C [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth A]IPR001865Small ribosomal subunit protein uS2Family
C [auth A]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
C [auth A]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
C [auth A]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
C [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth A]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
DA [auth b]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
DA [auth b]IPR000592Small ribosomal subunit protein eS27Family
DA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth c]IPR028626Ribosomal protein eS28 conserved siteConserved Site
EA [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth c]IPR000289Small ribosomal subunit protein eS28Family
FA [auth d]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
FA [auth d]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
FA [auth d]IPR001209Small ribosomal subunit protein uS14Family
FA [auth d]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
GA [auth e]IPR019954Ubiquitin conserved siteConserved Site
GA [auth e]IPR000626Ubiquitin-like domainDomain
GA [auth e]IPR006846Small ribosomal subunit protein eS30Family
GA [auth e]IPR039415Ubiquitin-like protein FUBIDomain
GA [auth e]IPR019956Ubiquitin domainDomain
GA [auth e]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
HA [auth f]IPR019954Ubiquitin conserved siteConserved Site
HA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth f]IPR000626Ubiquitin-like domainDomain
HA [auth f]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
HA [auth f]IPR002906Small ribosomal subunit protein eS31Domain
HA [auth f]IPR019956Ubiquitin domainDomain
HA [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IA [auth g]IPR019775WD40 repeat, conserved siteConserved Site
IA [auth g]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth g]IPR045223Small ribosomal subunit protein RACK1-likeFamily
IA [auth g]IPR020472G-protein beta WD-40 repeatRepeat
IA [auth g]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IA [auth g]IPR001680WD40 repeatRepeat
JA [auth h]IPR007836Large ribosomal subunit protein eS32Family
KA [auth r]IPR039547Large ribosomal subunit protein eL19Family
KA [auth r]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
KA [auth r]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
KA [auth r]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
KA [auth r]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
KA [auth r]IPR000196Large ribosomal subunit protein eL19 domainDomain
LA [auth w]IPR011017TRASH domainDomain
LA [auth w]IPR000988Large ribosomal subunit protein eL24-relatedFamily
LA [auth w]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
LA [auth w]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
D [auth B]IPR001593Small ribosomal subunit protein eS1Family
D [auth B]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
D [auth B]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
E [auth C]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth C]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth C]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
E [auth C]IPR000851Small ribosomal subunit protein uS5Family
E [auth C]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
E [auth C]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth C]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
F [auth D]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
F [auth D]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
F [auth D]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
F [auth D]IPR004044K Homology domain, type 2Domain
F [auth D]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
F [auth D]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
F [auth D]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
G [auth E]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
G [auth E]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
G [auth E]IPR013845Small ribosomal subunit protein eS4, central regionDomain
G [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth E]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
G [auth E]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
G [auth E]IPR002942RNA-binding S4 domainDomain
G [auth E]IPR000876Small ribosomal subunit protein eS4Family
G [auth E]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
G [auth E]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth E]IPR005824KOWDomain
H [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
H [auth F]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
H [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
H [auth F]IPR000235Small ribosomal subunit protein uS7Family
H [auth F]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
I [auth G]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
I [auth G]IPR001377Small ribosomal subunit protein eS6Family
I [auth G]IPR014401Small ribosomal subunit protein eS6-likeFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
J [auth H]PharosP62081
K [auth I]PharosP62241
L [auth J]PharosP46781
M [auth K]PharosP46783
N [auth L]PharosP62280
O [auth M]PharosP25398
P [auth N]PharosP62277
Q [auth O]PharosP62263
R [auth P]PharosP62841
S [auth Q]PharosP62249
T [auth R]PharosP08708
U [auth S]PharosP62269
V [auth T]PharosP39019
W [auth U]PharosP60866
X [auth V]PharosP63220
Y [auth W]PharosP62244
Z [auth X]PharosP62266
AA [auth Y]PharosP62847
BA [auth Z]PharosP62851
CA [auth a]PharosP62854
C [auth A]PharosP08865
DA [auth b]PharosP42677
EA [auth c]PharosP62857
FA [auth d]PharosP62273
GA [auth e]PharosP62861
HA [auth f]PharosP62979
IA [auth g]PharosP63244
JA [auth h]PharosP62945
KA [auth r]PharosP84098
LA [auth w]PharosP83731
E [auth C]PharosP15880
F [auth D]PharosP23396
G [auth E]PharosP62701
H [auth F]PharosP46782
I [auth G]PharosP62753