4Z89

SH3-II of Drosophila Rim-binding protein bound to a Cacophony derived peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF07653	e4z89A1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
B	PF07653	e4z89B1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
C	PF07653	e4z89C1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
D	PF07653	e4z89D1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
E	PF07653	e4z89E1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
F	PF07653	e4z89F1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
G	PF07653	e4z89G1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
H	PF07653	e4z89H1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
I	PF07653	e4z89I1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
J	PF07653	e4z89J1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
C	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
D	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
E	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
F	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
G	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
H	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
I	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
J	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF07653	Variant SH3 domain (SH3_2)	Variant SH3 domain	SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	RIM-binding protein, isoform F	-	cellular component organization organelle organization cortical cytoskeleton organization cellular process cellular component organization or biogenesis cytoskeleton organization cytoskeletal matrix organization at active zone cell junction organization presynaptic active zone organization synapse organization trans-synaptic signaling regulation of biological process signaling biological regulation cellular component organization organelle organization cortical cytoskeleton organization cellular process cellular component organization or biogenesis cytoskeleton organization cytoskeletal matrix organization at active zone cell junction organization presynaptic active zone organization synapse organization trans-synaptic signaling regulation of biological process signaling biological regulation cell-cell signaling chemical synaptic transmission cell communication synaptic signaling anterograde trans-synaptic signaling neuromuscular synaptic transmission	neuromuscular junction synapse cell junction cellular anatomical entity intracellular anatomical structure cell cortex cortical cytoskeleton cytoskeleton of presynaptic active zone cytoplasmic region presynaptic active zone cytoplasmic component presynaptic cytoskeleton intracellular organelle cell periphery presynapse neuromuscular junction synapse cell junction cellular anatomical entity intracellular anatomical structure cell cortex cortical cytoskeleton cytoskeleton of presynaptic active zone cytoplasmic region presynaptic active zone cytoplasmic component presynaptic cytoskeleton intracellular organelle cell periphery presynapse cytoskeleton organelle intracellular non-membrane-bounded organelle cell cortex region cytoplasm non-membrane-bounded organelle presynaptic active zone
K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], P [auth f], Q [auth g], R [auth h], S [auth i], T [auth j]	Voltage-dependent calcium channel type A subunit alpha-1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity low voltage-gated calcium channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity low voltage-gated calcium channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity high voltage-gated calcium channel activity	heart process multicellular organismal process system process regulation of biological process regulation of heart contraction regulation of system process biological regulation circulatory system process regulation of blood circulation regulation of multicellular organismal process regulation of biological quality heart contraction blood circulation regulation of heart rate heart process multicellular organismal process system process regulation of biological process regulation of heart contraction regulation of system process biological regulation circulatory system process regulation of blood circulation regulation of multicellular organismal process regulation of biological quality heart contraction blood circulation regulation of heart rate adult locomotory behavior behavior adult behavior locomotory behavior cellular component disassembly catabolic process macroautophagy protein-containing complex organization cellular metabolic process autophagy protein-containing complex disassembly cellular catabolic process cellular component organization autophagosome maturation cellular process metabolic process cellular component organization or biogenesis process utilizing autophagic mechanism detection of light stimulus involved in visual perception detection of light stimulus response to light stimulus detection of external stimulus sensory perception of light stimulus response to stimulus nervous system process detection of visible light response to external stimulus detection of abiotic stimulus detection of stimulus sensory perception detection of light stimulus involved in sensory perception response to abiotic stimulus response to radiation visual perception detection of stimulus involved in sensory perception developmental process cellular developmental process cell development developmental maturation nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation neuron remodeling anatomical structure maturation cell differentiation neuron development anatomical structure development neuron maturation cell maturation system development trans-synaptic signaling cellular localization neurotransmitter secretion transport signaling secretion cell-cell signaling export from cell neurotransmitter transport establishment of localization cell communication chemical synaptic transmission localization signal release from synapse synaptic signaling secretion by cell signal release anterograde trans-synaptic signaling establishment of localization in cell epithelial fluid transport transepithelial transport fluid transport reproductive process multicellular organismal reproductive process reproductive behavior courtship behavior mating behavior visual behavior cellular response to stimulus regulation of cellular process intracellular signal transduction calcium-mediated signaling intracellular signaling cassette signal transduction regulation of localization modulation of chemical synaptic transmission regulation of secretion by cell regulation of signaling regulation of transport regulation of neurotransmitter transport regulation of secretion regulation of trans-synaptic signaling regulation of neurotransmitter secretion regulation of cell communication import into cell calcium ion transmembrane import into cytosol monoatomic ion transmembrane transport import across plasma membrane inorganic ion transmembrane transport inorganic cation import across plasma membrane calcium ion transport metal ion transport inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport calcium ion import across plasma membrane inorganic ion import across plasma membrane monoatomic ion transport calcium ion import calcium ion import into cytosol monoatomic cation transport calcium ion transmembrane transport regulation of calcium ion transport positive regulation of cation transmembrane transport positive regulation of calcium ion transport regulation of calcium ion transport into cytosol positive regulation of biological process regulation of monoatomic ion transmembrane transport regulation of calcium ion transmembrane transport positive regulation of monoatomic ion transport positive regulation of calcium ion transmembrane transport positive regulation of transmembrane transport positive regulation of monoatomic ion transmembrane transport regulation of metal ion transport positive regulation of cellular process regulation of monoatomic ion transport positive regulation of cytosolic calcium ion concentration positive regulation of calcium ion transport into cytosol regulation of transmembrane transport positive regulation of transport regulation of cellular localization regulation of monoatomic cation transmembrane transport calcium ion transport into cytosol phototransduction positive regulation of neuromuscular junction development positive regulation of nervous system development regulation of growth developmental growth cellular component biogenesis positive regulation of developmental process cellular component assembly neuromuscular junction development regulation of synaptic assembly at neuromuscular junction regulation of synapse structure or activity synapse organization regulation of neuromuscular junction development positive regulation of developmental growth positive regulation of synaptic assembly at neuromuscular junction regulation of cell junction assembly positive regulation of multicellular organismal process synapse assembly positive regulation of synapse assembly regulation of cellular component organization positive regulation of cellular component organization regulation of developmental process regulation of nervous system development cell junction assembly regulation of synapse assembly regulation of multicellular organismal development regulation of developmental growth positive regulation of cellular component biogenesis growth regulation of cellular component biogenesis regulation of synapse organization positive regulation of cell junction assembly positive regulation of growth cell junction organization synaptic assembly at neuromuscular junction exocytosis vesicle-mediated transport male courtship behavior, veined wing extension male mating behavior male courtship behavior male courtship behavior, veined wing generated song production male courtship behavior, veined wing vibration regulation of membrane potential in photoreceptor cell regulation of membrane potential cellular homeostasis neuron cellular homeostasis homeostatic process	presynapse synapse cell junction cellular anatomical entity presynaptic active zone cell periphery apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane basal part of cell basal plasma membrane basolateral plasma membrane presynapse synapse cell junction cellular anatomical entity presynaptic active zone cell periphery apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane basal part of cell basal plasma membrane basolateral plasma membrane neuromuscular junction protein-containing complex plasma membrane protein complex voltage-gated calcium channel complex membrane protein complex cation channel complex transporter complex transmembrane transporter complex calcium channel complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR003961	Fibronectin type III	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR035753	RIMS-binding protein, second SH3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR001452	SH3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR035755	RIMS-binding protein, third SH3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR040325	RIMS-binding protein 1/2/3	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR036116	Fibronectin type III superfamily	Homologous Superfamily
K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], P [auth f], Q [auth g], R [auth h], S [auth i], T [auth j]	IPR014873	Voltage-dependent calcium channel, alpha-1 subunit, IQ domain	Domain
K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], P [auth f], Q [auth g], R [auth h], S [auth i], T [auth j]	IPR002077	Voltage-dependent calcium channel, alpha-1 subunit	Family
K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], P [auth f], Q [auth g], R [auth h], S [auth i], T [auth j]	IPR031649	Voltage-dependent L-type calcium channel, IQ-associated domain	Domain
K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], P [auth f], Q [auth g], R [auth h], S [auth i], T [auth j]	IPR002048	EF-hand domain	Domain
K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], P [auth f], Q [auth g], R [auth h], S [auth i], T [auth j]	IPR005821	Ion transport domain	Domain
K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], P [auth f], Q [auth g], R [auth h], S [auth i], T [auth j]	IPR027359	Voltage-dependent channel domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], P [auth f], Q [auth g], R [auth h], S [auth i], T [auth j]	ACE	RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 PSI-MOD : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], K [auth a], L [auth b], M [auth c], N [auth d], O [auth e], P [auth f], Q [auth g], R [auth h], S [auth i], T [auth j]	NH2	RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 PSI-MOD : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.