4YCO

E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01207	e4ycoA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF01207	ECOD (1.6)
B	PF01207	e4ycoB1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF01207	ECOD (1.6)
C	PF01207	e4ycoC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF01207	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
A	1.20.225.30	Mainly Alpha	Up-down Bundle	Bacteriocin As-48	Chain A	CATH (4.3.0)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
B	1.20.225.30	Mainly Alpha	Up-down Bundle	Bacteriocin As-48	Chain A	CATH (4.3.0)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
C	1.20.225.30	Mainly Alpha	Up-down Bundle	Bacteriocin As-48	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF01207	Dihydrouridine synthase (Dus) (Dus)	Dihydrouridine synthase (Dus)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	tRNA-dihydrouridine synthase C	oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid tRNA-dihydrouridine16 synthase activity catalytic activity, acting on a tRNA RNA dihydrouridine synthase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity tRNA dihydrouridine synthase activity binding nucleotide binding FMN binding nucleoside phosphate binding oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid tRNA-dihydrouridine16 synthase activity catalytic activity, acting on a tRNA RNA dihydrouridine synthase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity tRNA dihydrouridine synthase activity binding nucleotide binding FMN binding nucleoside phosphate binding ion binding organic cyclic compound binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding RNA binding tRNA binding nucleic acid binding flavin adenine dinucleotide binding	cellular biosynthetic process RNA metabolic process tRNA dihydrouridine synthesis nucleobase-containing compound metabolic process organic substance metabolic process tRNA processing organic substance biosynthetic process RNA processing cellular metabolic process tRNA modification primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process cellular biosynthetic process RNA metabolic process tRNA dihydrouridine synthesis nucleobase-containing compound metabolic process organic substance metabolic process tRNA processing organic substance biosynthetic process RNA processing cellular metabolic process tRNA modification primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process organic cyclic compound metabolic process RNA modification biosynthetic process ncRNA metabolic process macromolecule modification nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process	-
D, E, F	tRNAphe	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR001269	tRNA-dihydrouridine synthase	Family
A, B, C	IPR018517	tRNA-dihydrouridine synthase, conserved site	Conserved Site
A, B, C	IPR035587	DUS-like, FMN-binding domain	Domain
A, B, C	IPR042270	tRNA-dihydrouridine(16) synthase, C-terminal	Homologous Superfamily
A, B, C	IPR032886	tRNA-dihydrouridine(16) synthase	Family
A, B, C	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.