4V7E

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Y [auth Bd]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052575 3000068 SCOP2B (2022-06-29)
WA [auth CR]SCOP2 FamilyRibosomal protein L19 (L19e)8100019 4001138 SCOP2 (2022-06-29)
WA [auth CR]SCOP2 SuperfamilyRibosomal protein L19 (L19e)8100020 3000890 SCOP2 (2022-06-29)
XB [auth Cp]SCOP2B SuperfamilyZn-binding ribosomal proteins8101403 3001320 SCOP2B (2022-06-29)
CC [auth CE]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053107 3000334 SCOP2B (2022-06-29)
CC [auth CE]SCOP2B SuperfamilyRibosomal protein L6e N-terminal domain8053106 3002160 SCOP2B (2022-06-29)
J [auth Bg]SCOP2B SuperfamilyWD40 repeat-like8100182 3001694 SCOP2B (2022-06-29)
Q [auth BS]SCOP2 FamilyRibosomal protein S138101708 4000260 SCOP2 (2022-06-29)
Q [auth BS]SCOP2 SuperfamilyS13-like H2TH domain8101709 3000053 SCOP2 (2022-06-29)
W [auth Bc]SCOP2 FamilyCold shock DNA-binding domain-like8100015 4001909 SCOP2 (2022-06-29)
W [auth Bc]SCOP2 SuperfamilyNucleic acid-binding proteins8100016 3000135 SCOP2 (2022-06-29)
NA [auth Cz]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8065346 3001911 SCOP2B (2022-06-29)
PA [auth CJ]SCOP2B SuperfamilyRL5-like8073890 3001709 SCOP2B (2022-06-29)
RA [auth CV]SCOP2 FamilyRibosomal protein L148072061 4001826 SCOP2 (2022-06-29)
RA [auth CV]SCOP2 Superfamily50S Ribosomal protein L14-like8072062 3000433 SCOP2 (2022-06-29)
UA [auth CQ]SCOP2 FamilyRibosomal proteins L15p and L18e8046510 4003555 SCOP2 (2022-06-29)
UA [auth CQ]SCOP2 SuperfamilyRibosomal proteins L15p and L18e8095976 3001045 SCOP2 (2022-06-29)
CB [auth Cc]SCOP2B SuperfamilyL30e-like8077493 3001739 SCOP2B (2022-06-29)
GB [auth Cl]SCOP2B SuperfamilyRibosomal protein L39e8099598 3001756 SCOP2B (2022-06-29)
LB [auth Ci]SCOP2 FamilyRibosomal protein L36e8048625 4006168 SCOP2 (2022-06-29)
LB [auth Ci]SCOP2 SuperfamilyRibosomal protein L36e8053117 3002161 SCOP2 (2022-06-29)
SB [auth CF]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052938 3001378 SCOP2B (2022-06-29)
SB [auth CF]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052937 3002152 SCOP2B (2022-06-29)
UB [auth CB]SCOP2B SuperfamilyTranslational proteins8078349 3000811 SCOP2B (2022-06-29)
GC [auth Cg]SCOP2B SuperfamilyRibosomal protein L34e-like8099600 3002203 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth BX]PF00164e4v7eBX1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
L [auth BE]PF00900e4v7eBE2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
L [auth BE]PF00467,PF16121e4v7eBE3 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
L [auth BE]PF01479e4v7eBE1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF01479ECOD (1.6)
Y [auth Bd]PF00253e4v7eBd1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
HA [auth BC]PF03719e4v7eBC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
HA [auth BC]PF00333e4v7eBC3 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
HA [auth BC]PF00333e4v7eBC2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
JA [auth BH]PF01251e4v7eBH1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
KA [auth CG]PF01248e4v7eCG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
WA [auth CR]PF01280e4v7eCR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
WA [auth CR]PF01280e4v7eCR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
DB [auth Cd]PF01198e4v7eCd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
JB [auth CS]F_UNCLASSIFIEDe4v7eCS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
JB [auth CS]PF01775e4v7eCS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
RB [auth Ch]PF00831e4v7eCh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
WB [auth CO]PF00572e4v7eCO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
XB [auth Cp]PF01780e4v7eCp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
CC [auth CE]PF01159e4v7eCE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
J [auth Bg]PF00400e4v7eBg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
K [auth BD]PF00189e4v7eBD2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
K [auth BD]PF07650e4v7eBD1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
M [auth BF]PF00177e4v7eBF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
N [auth BQ]PF00380e4v7eBQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
O [auth BU]PF00338e4v7eBU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
P [auth BO]PF00411e4v7eBO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
Q [auth BS]PF00416e4v7eBS1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
R [auth BN]PF08069e4v7eBN2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
R [auth BN]PF00312e4v7eBN1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
S [auth BL]PF00366,PF16205e4v7eBL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
T [auth BT]PF01090e4v7eBT1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
U [auth BP]PF00203e4v7eBP1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
V [auth BZ]PF03297e4v7eBZ1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
W [auth Bc]PF01200e4v7eBc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
X [auth BW]PF00410e4v7eBW2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
X [auth BW]PF00410e4v7eBW1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
Z [auth Bb]PF01667e4v7eBb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
AA [auth Be]PF04758e4v7eBe1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
BAPF00318e4v7eBA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
CA [auth BR]PF00833e4v7eBR1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
DA [auth BB]PF01015e4v7eBB1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
DA [auth BB]PF01015e4v7eBB2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
EA [auth BV]PF01249e4v7eBV1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
FA [auth Ba]PF01283e4v7eBa1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
GA [auth BJ]PF00163,PF01479e4v7eBJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
IA [auth BG]PF01092e4v7eBG1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
LA [auth CT]PF01157e4v7eCT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
MA [auth CZ]PF00467,PF01777e4v7eCZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
D [auth BY]PF01282e4v7eBY1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
NA [auth Cz]PF00687e4v7eCz1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
NA [auth Cz]PF00687e4v7eCz2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
OA [auth CA]PF00181e4v7eCA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
OA [auth CA]PF03947e4v7eCA2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
PA [auth CJ]PF00281e4v7eCJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281ECOD (1.6)
QA [auth CH]PF00347e4v7eCH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
RA [auth CV]PF00238e4v7eCV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
SA [auth CN]PF00827e4v7eCN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
TA [auth Ca]PF00828e4v7eCa1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
UA [auth CQ]PF17135e4v7eCQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
VA [auth CD]PF14204,PF17144e4v7eCD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
E [auth BI]PF01201e4v7eBI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
XA [auth CP]PF00237e4v7eCP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
YA [auth CX]PF00276,PF03939e4v7eCX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
ZA [auth CW]PF01246e4v7eCW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
AB [auth CY]PF16906e4v7eCY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
CB [auth Cc]PF01248e4v7eCc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
EB [auth Ce]PF01655e4v7eCe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
FB [auth Cj]PF01907e4v7eCj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
GB [auth Cl]PF00832e4v7eCl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
F [auth BK]PF03501e4v7eBK1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
HB [auth Co]PF00935e4v7eCo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
IB [auth CM]PF01929e4v7eCM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01929ECOD (1.6)
KB [auth CU]PF01776e4v7eCU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
LB [auth Ci]PF01158e4v7eCi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
MB [auth CK]PF00298e4v7eCK2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
MB [auth CK]PF03946e4v7eCK1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
QB [auth Ct]PF00428e4v7eCt1 A: alpha arraysX: 60S acidic ribosomal protein P1/P2 (From Topology)H: 60S acidic ribosomal protein P1/P2 (From Topology)T: 60S acidic ribosomal protein P1/P2F: PF00428ECOD (1.6)
PB [auth Cs]PF00428e4v7eCs1 A: alpha arraysX: 60S acidic ribosomal protein P1/P2 (From Topology)H: 60S acidic ribosomal protein P1/P2 (From Topology)T: 60S acidic ribosomal protein P1/P2F: PF00428ECOD (1.6)
SB [auth CF]PF00327,PF08079e4v7eCF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
G [auth BM]PF01248e4v7eBM1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
TB [auth Cq]PF00466e4v7eCq3 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
TB [auth Cq]PF17777e4v7eCq2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
UB [auth CB]PF00297e4v7eCB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
VB [auth CC]PF00573e4v7eCC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
VB [auth CC]PF14374e4v7eCC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
YB [auth CI]PF00252e4v7eCI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
ZB [auth Cn]PF05162e4v7eCn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
AC [auth Cm]PF01020e4v7eCm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
BC [auth CL]PF01294e4v7eCL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
H [auth Bf]PF01599e4v7eBf1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
DC [auth Cf]PF01247e4v7eCf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
EC [auth Ck]PF01781e4v7eCk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
FC [auth Cb]PF01779e4v7eCb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
GC [auth Cg]PF01199e4v7eCg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Y [auth Bd]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
JA [auth BH]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
WA [auth CR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
RB [auth Ch]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
WB [auth CO]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
XB [auth Cp]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
CC [auth CE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
J [auth Bg]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
K [auth BD]PF07650KH domain (KH_2)KH domain- Domain
K [auth BD]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
Q [auth BS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
W [auth Bc]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
LA [auth CT]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
NA [auth Cz]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
PA [auth CJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PA [auth CJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
RA [auth CV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
UA [auth CQ]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
CB [auth Cc]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
GB [auth Cl]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
LB [auth Ci]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
NB [auth Cu],
OB [auth Cv]
PF0042860s Acidic ribosomal protein (Ribosomal_60s)60s Acidic ribosomal protein- Family
SB [auth CF]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
SB [auth CF]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
UB [auth CB]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
GC [auth Cg]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth BX]40S ribosomal protein S12---
L [auth BE]40S ribosomal protein S4E---
Y [auth Bd]40S ribosomal protein S14
HA [auth BC]40S ribosomal protein S5---
JA [auth BH]40S ribosomal protein S7E
KA [auth CG]60S ribosomal protein L8E---
WA [auth CR]60S ribosomal protein L19E
DB [auth Cd]60S ribosomal protein L31E---
JB [auth CS]60S ribosomal protein L20---
RB [auth Ch]60S ribosomal protein L29
WB [auth CO]60S ribosomal protein L13
XB [auth Cp]60S ribosomal protein L43E
CC [auth CE]60S ribosomal protein L6E
HC [auth Aa]60S ribosomal RNA---
A [auth Ad]18S ribosomal RNA---
J [auth Bg]RACK1- -
K [auth BD]40S ribosomal protein S3
M [auth BF]40S ribosomal protein S7---
N [auth BQ]40S ribosomal protein S9---
O [auth BU]40S ribosomal protein S10---
P [auth BO]40S ribosomal protein S11---
Q [auth BS]40S ribosomal protein S13
R [auth BN]40S ribosomal protein S15---
S [auth BL]40S ribosomal protein S17---
B [auth Ae]P-site tRNA---
T [auth BT]40S ribosomal protein S19E---
U [auth BP]40S ribosomal protein S19---
V [auth BZ]40S ribosomal protein S25E---
W [auth Bc]40S ribosomal protein S28E
X [auth BW]40S ribosomal protein S8---
Z [auth Bb]40S ribosomal protein S27E---
AA [auth Be]40S ribosomal protein S30E---
40S ribosomal protein S2---
CA [auth BR]40S ribosomal protein S17E---
C [auth Af]5'-R(*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'---
DA [auth BB]40S ribosomal protein S1E---
EA [auth BV]40S ribosomal protein S21E---
FA [auth Ba]40S ribosomal protein S26E---
GA [auth BJ]40S ribosomal protein S4---
IA [auth BG]40S ribosomal protein S6---
LA [auth CT]60S ribosomal protein L21E
MA [auth CZ]60S ribosomal protein L27E---
D [auth BY]40S ribosomal protein S24E---
NA [auth Cz]60S ribosomal protein L1
OA [auth CA]60S ribosomal protein L2---
PA [auth CJ]60S ribosomal protein L5
QA [auth CH]60S ribosomal protein L6---
RA [auth CV]60S ribosomal protein L14
SA [auth CN]60S ribosomal protein L15E---
TA [auth Ca]60S ribosomal protein L15---
UA [auth CQ]60S ribosomal protein L18E
VA [auth CD]60S ribosomal protein L18---
E [auth BI]40S ribosomal protein S8E---
XA [auth CP]60S ribosomal protein L22---
YA [auth CX]60S ribosomal protein L23---
ZA [auth CW]60S ribosomal protein L24E---
AB [auth CY]60S ribosomal protein L24---
BB [auth Cr]60S ribosomal protein L28E---
CB [auth Cc]60S ribosomal protein L30E -
EB [auth Ce]60S ribosomal protein L32E---
FB [auth Cj]60S ribosomal protein L37E---
GB [auth Cl]60S ribosomal protein L39E
F [auth BK]40S ribosomal protein S10E---
HB [auth Co]60S ribosomal protein L44E---
IB [auth CM]60S ribosomal protein L14E---
KB [auth CU]60S ribosomal protein L22E---
LB [auth Ci]60S ribosomal protein L36E
MB [auth CK]60S ribosomal protein L11---
NB [auth Cu],
OB [auth Cv]
60S ribosomal protein P1
PB [auth Cs],
QB [auth Ct]
Acidic ribosomal protein P2---
SB [auth CF]60S ribosomal protein L30
G [auth BM]40S ribosomal protein S12E---
TB [auth Cq]60S acidic ribosomal protein P0---
UB [auth CB]60S ribosomal protein L3
VB [auth CC]60S ribosomal protein L4---
YB [auth CI]60S ribosomal protein L16---
ZB [auth Cn]60S ribosomal protein L41E---
AC [auth Cm]60S ribosomal protein L40E---
BC [auth CL]60S ribosomal protein L13E---
H [auth Bf]40S ribosomal protein S31e---
DC [auth Cf]60S ribosomal protein L33E---
EC [auth Ck]60S ribosomal protein L38E---
FC [auth Cb]60S ribosomal protein L29E---
GC [auth Cg]60S ribosomal protein L34E
IC [auth Ac]5.8S ribosomal RNA---
JC [auth Ab]5S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
Y [auth Bd]IPR001209Small ribosomal subunit protein uS14Family
Y [auth Bd]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
Y [auth Bd]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
JA [auth BH]IPR000554Small ribosomal subunit protein eS7Family
JA [auth BH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
WA [auth CR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
WA [auth CR]IPR039547Large ribosomal subunit protein eL19Family
WA [auth CR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
WA [auth CR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
WA [auth CR]IPR000196Large ribosomal subunit protein eL19 domainDomain
WA [auth CR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
RB [auth Ch]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
RB [auth Ch]IPR001854Large ribosomal subunit protein uL29Family
RB [auth Ch]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
WB [auth CO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
WB [auth CO]IPR005822Large ribosomal subunit protein uL13Family
WB [auth CO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
WB [auth CO]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
XB [auth Cp]IPR002674Large ribosomal subunit protein eL43Family
XB [auth Cp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XB [auth Cp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
CC [auth CE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
CC [auth CE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CC [auth CE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
CC [auth CE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CC [auth CE]IPR000915Large ribosomal subunit protein eL6Family
J [auth Bg]IPR001632G-protein, beta subunitDomain
J [auth Bg]IPR001680WD40 repeatRepeat
J [auth Bg]IPR019775WD40 repeat, conserved siteConserved Site
J [auth Bg]IPR016346Guanine nucleotide-binding protein, beta subunitFamily
J [auth Bg]IPR020472G-protein beta WD-40 repeatRepeat
J [auth Bg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
J [auth Bg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
K [auth BD]IPR004044K Homology domain, type 2Domain
K [auth BD]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
K [auth BD]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
K [auth BD]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
K [auth BD]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
K [auth BD]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
K [auth BD]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
Q [auth BS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
Q [auth BS]IPR001892Small ribosomal subunit protein uS13Family
Q [auth BS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
Q [auth BS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
W [auth Bc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
W [auth Bc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
W [auth Bc]IPR000289Small ribosomal subunit protein eS28Family
LA [auth CT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
LA [auth CT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
LA [auth CT]IPR001147Large ribosomal subunit protein eL21Family
LA [auth CT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth Cz]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
NA [auth Cz]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
NA [auth Cz]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
NA [auth Cz]IPR002143Large ribosomal subunit protein uL1Family
NA [auth Cz]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
PA [auth CJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
PA [auth CJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
PA [auth CJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
PA [auth CJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
PA [auth CJ]IPR002132Large ribosomal subunit protein uL5Family
RA [auth CV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
RA [auth CV]IPR000218Large ribosomal subunit protein uL14Family
RA [auth CV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
UA [auth CQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
UA [auth CQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
UA [auth CQ]IPR000039Large ribosomal subunit protein eL18Family
UA [auth CQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
CB [auth Cc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
CB [auth Cc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
CB [auth Cc]IPR039109Large ribosomal subunit protein eL30-likeFamily
CB [auth Cc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
GB [auth Cl]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
GB [auth Cl]IPR000077Large ribosomal subunit protein eL39Family
GB [auth Cl]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
LB [auth Ci]IPR000509Large ribosomal subunit protein eL36Family
LB [auth Ci]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
NB [auth Cu],
OB [auth Cv]
IPR027534Large ribosomal subunit protein P1/P2Family
NB [auth Cu],
OB [auth Cv]
IPR038716Large ribosomal subunit protein P1/P2, N-terminal domainHomologous Superfamily
SB [auth CF]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
SB [auth CF]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
SB [auth CF]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
SB [auth CF]IPR039699Large ribosomal subunit protein uL30Family
SB [auth CF]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
SB [auth CF]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
SB [auth CF]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
UB [auth CB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
UB [auth CB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
UB [auth CB]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
UB [auth CB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
UB [auth CB]IPR000597Large ribosomal subunit protein uL3Family
GC [auth Cg]IPR008195Large ribosomal subunit protein eL34Family
GC [auth Cg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site