4U8T
Crystal structure of YTH domain of Zygosaccharomyces rouxii MRB1 protein in complex with N6-Methyladenosine RNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4u8ta1 | All beta proteins | PUA domain-like | PUA domain-like | YTH domain | MRB1 | (Zygosaccharomyces rouxii CBS 732 ) [TaxId: 559307 ], | SCOPe (2.08) |
A | d4u8ta2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Zygosaccharomyces rouxii CBS 732 ) [TaxId: 559307 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | PUA domain-like | 8090675 | 3001015 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PUA domain-like | 8090675 | 3001015 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PUA domain-like | 8090675 | 3001015 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PUA domain-like | 8090675 | 3001015 | SCOP2B (2022-06-29) |
E | SCOP2 Family | YTH domain-like | 8045438 | 4004472 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | PUA domain-like | 8090675 | 3001015 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | PUA domain-like | 8090675 | 3001015 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | PF04146 | e4u8tD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF04146 | ECOD (1.6) |
A | PF04146 | e4u8tA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF04146 | ECOD (1.6) |
B | PF04146 | e4u8tB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF04146 | ECOD (1.6) |
C | PF04146 | e4u8tC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF04146 | ECOD (1.6) |
E | PF04146 | e4u8tE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF04146 | ECOD (1.6) |
F | PF04146 | e4u8tF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF04146 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (4.3.0) |
A | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (4.3.0) |
B | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (4.3.0) |
C | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (4.3.0) |
E | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (4.3.0) |
F | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04146 | YT521-B-like domain (YTH) | YT521-B-like domain | A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells [3]. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppr ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
ZYRO0G01672p | - | - | ||
RNA (5'-R(*AP*GP*GP*(6MZ)P*CP*AP*U)-3') | - | - | - |