4U65

Structure of the periplasmic output domain of the Legionella pneumophila LapD ortholog CdgS9 in complex with Pseudomonas fluorescens LapG

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Sensory domain-like	8053817	3001802	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Sensory domain-like	8053817	3001802	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Sensory domain-like	8053817	3001802	SCOP2B (2022-06-29)
D	SCOP2 Family	LapD output domain-like	8045601	4004560	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Sensory domain-like	8053817	3001802	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	PF16448	e4u65C1	A: a+b three layers	X: Profilin-like	H: LapD periplasmic domain (From Topology)	T: LapD periplasmic domain	F: PF16448	ECOD (1.6)
A	PF16448	e4u65A1	A: a+b three layers	X: Profilin-like	H: LapD periplasmic domain (From Topology)	T: LapD periplasmic domain	F: PF16448	ECOD (1.6)
B	PF16448	e4u65B1	A: a+b three layers	X: Profilin-like	H: LapD periplasmic domain (From Topology)	T: LapD periplasmic domain	F: PF16448	ECOD (1.6)
D	PF16448	e4u65D1	A: a+b three layers	X: Profilin-like	H: LapD periplasmic domain (From Topology)	T: LapD periplasmic domain	F: PF16448	ECOD (1.6)
F	PF06035	e4u65F1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF06035	ECOD (1.6)
E	PF06035	e4u65E1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF06035	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.10.620.30	Alpha Beta	Roll	C8orf32 fold		CATH (4.3.0)
E	3.10.620.30	Alpha Beta	Roll	C8orf32 fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF16448	LapD/MoxY periplasmic domain (LapD_MoxY_N)	LapD/MoxY periplasmic domain	This domain is the N-terminal periplasmic domain of the LapD and MoxY receptor proteins [1-2].	Domain
E, F	PF06035	Bacterial transglutaminase-like cysteine proteinase BTLCP (Peptidase_C93)	Bacterial transglutaminase-like cysteine proteinase BTLCP	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Two component histidine kinase, GGDEF domain protein/EAL domain protein	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	phosphorylation cellular metabolic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation signal transduction cell communication	membrane cellular anatomical entity
E, F	Putative cystine protease	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000160	GGDEF domain	Domain
A, B, C, D	IPR003660	HAMP domain	Domain
A, B, C, D	IPR042461	LapD/MoxY periplasmic domain, C-terminal	Homologous Superfamily
A, B, C, D	IPR032244	LapD/MoxY, periplasmic domain	Domain
A, B, C, D	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B, C, D	IPR001633	EAL domain	Domain
A, B, C, D	IPR035919	EAL domain superfamily	Homologous Superfamily
A, B, C, D	IPR029787	Nucleotide cyclase	Homologous Superfamily
E, F	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
E, F	IPR010319	Transglutaminase-like cysteine peptidase, predicted	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.