4QPO
Mechanistic basis of plasmid-specific DNA binding of the F plasmid regulatory protein, TraM
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4qpoa_ | All alpha proteins | IHF-like DNA-binding proteins | IHF-like DNA-binding proteins | DNA-binding domain (fragment?) of the TraM protein | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
B | d4qpob_ | All alpha proteins | IHF-like DNA-binding proteins | IHF-like DNA-binding proteins | DNA-binding domain (fragment?) of the TraM protein | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
C | d4qpoc_ | All alpha proteins | IHF-like DNA-binding proteins | IHF-like DNA-binding proteins | DNA-binding domain (fragment?) of the TraM protein | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
D | d4qpod_ | All alpha proteins | IHF-like DNA-binding proteins | IHF-like DNA-binding proteins | DNA-binding domain (fragment?) of the TraM protein | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | DNA-binding domain (fragment?) of the TraM protein | 8073272 | 4003039 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF05261 | e4qpoA1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
B | PF05261 | e4qpoB1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
C | PF05261 | e4qpoC1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
D | PF05261 | e4qpoD1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
B | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
C | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
D | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Relaxosome protein TraM | - |