4P2V | pdb_00004p2v

Structure of the AI-2 processing enzyme LsrF in complex with the product of the LsrG reaction P-HPD

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth K]	V-set	e4p2vK1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)
I	V-set	e4p2vI1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)
H	V-set	e4p2vH1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)
G	V-set	e4p2vG1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)
F	V-set	e4p2vF1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)
E	V-set	e4p2vE1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)
D	V-set	e4p2vD1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)
C	V-set	e4p2vC1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)
B	V-set	e4p2vB1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)
A	V-set	e4p2vA1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: V-set	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J [auth K]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
I	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
H	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
G	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
F	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
E	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
D	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K]	PF01791	DeoC/LacD family aldolase (DeoC)	DeoC/LacD family aldolase	This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function, ...	This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function, see examples Swiss:Q57843 and Swiss:P76143. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K]	Uncharacterized aldolase LsrF	fructose-bisphosphate aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K]	IPR002915	DeoC/FbaB/LacD aldolase	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K]	IPR033673	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K]	IPR041720	Aldolase FbaB-like, archaeal-type	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K]	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth K]	IPR050456	DeoC/FbaB aldolase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.