4P25

Structure of the P domain from a GI.7 Norovirus variant in complex with LeY HBGA.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4p25a1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	automated matches	automated matches	(Norovirus Hu/GI.7/TCH-060/USA/2003 ) [TaxId: 1097017 ],	SCOPe (2.08)
A	d4p25a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Norovirus Hu/GI.7/TCH-060/USA/2003 ) [TaxId: 1097017 ],	SCOPe (2.08)
B	d4p25b1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	automated matches	automated matches	(Norovirus Hu/GI.7/TCH-060/USA/2003 ) [TaxId: 1097017 ],	SCOPe (2.08)
B	d4p25b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Norovirus Hu/GI.7/TCH-060/USA/2003 ) [TaxId: 1097017 ],	SCOPe (2.08)
C	d4p25c1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	automated matches	automated matches	(Norovirus Hu/GI.7/TCH-060/USA/2003 ) [TaxId: 1097017 ],	SCOPe (2.08)
C	d4p25c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Norovirus Hu/GI.7/TCH-060/USA/2003 ) [TaxId: 1097017 ],	SCOPe (2.08)
D	d4p25d1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	automated matches	automated matches	(Norovirus Hu/GI.7/TCH-060/USA/2003 ) [TaxId: 1097017 ],	SCOPe (2.08)
D	d4p25d3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Norovirus Hu/GI.7/TCH-060/USA/2003 ) [TaxId: 1097017 ],	SCOPe (2.08)
D	d4p25d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Norovirus Hu/GI.7/TCH-060/USA/2003 ) [TaxId: 1097017 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00915,PF08435	e4p25A1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00915,PF08435	ECOD (1.6)
B	PF00915,PF08435	e4p25B1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00915,PF08435	ECOD (1.6)
C	PF00915,PF08435	e4p25C1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00915,PF08435	ECOD (1.6)
D	PF00915,PF08435	e4p25D1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00915,PF08435	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.510.10	Mainly Beta	Beta Barrel	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	CATH (4.3.0)
A	2.40.30.120	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
B	2.40.510.10	Mainly Beta	Beta Barrel	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	CATH (4.3.0)
B	2.40.30.120	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
C	2.40.510.10	Mainly Beta	Beta Barrel	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	CATH (4.3.0)
C	2.40.30.120	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
D	2.40.510.10	Mainly Beta	Beta Barrel	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	CATH (4.3.0)
D	2.40.30.120	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00915	Calicivirus coat protein (Calici_coat)	Calicivirus coat protein	-	Family
A, B, C, D	PF08435	Calicivirus coat protein C-terminal (Calici_coat_C)	Calicivirus coat protein C-terminal	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D	IPR004005	Calicivirus coat protein	Domain
A, B, C, D	IPR013643	Calicivirus coat protein C-terminal	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.