4NWP

Computationally Designed Two-Component Self-Assembling Tetrahedral Cage, T33-21, Crystallized in Space Group R32

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Cobalamin adenosyltransferase	8064698	4003724	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
E	SCOP2 Family	5-carboxymethyl-2-hydroxymuconate isomerase (CHMI)	8084398	4001529	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF01923	e4nwpB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
D	PF01923	e4nwpD1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
A	PF01923	e4nwpA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
C	PF01923	e4nwpC1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
G	PF02962	e4nwpG1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
H	PF02962	e4nwpH1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
E	PF02962	e4nwpE1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
F	PF02962	e4nwpF1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
D	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
A	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
C	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
G	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
H	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
E	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
F	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01923	Cobalamin adenosyltransferase (Cob_adeno_trans)	Cobalamin adenosyltransferase	Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion ...	Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation [1].The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12 [2].	Domain
E, F, G, H	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase (CHMI)	5-carboxymethyl-2-hydroxymuconate isomerase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative uncharacterized protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding transferase activity catalytic activity	-	-
E, F, G, H	Uncharacterized protein	isomerase activity intramolecular oxidoreductase activity, transposing C=C bonds intramolecular oxidoreductase activity 5-carboxymethyl-2-hydroxymuconate delta-isomerase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR029499	Corrinoid adenosyltransferase, PduO-type	Family
A, B, C, D	IPR036451	Cobalamin adenosyltransferase-like superfamily	Homologous Superfamily
A, B, C, D	IPR016030	Cobalamin adenosyltransferase-like	Domain
E, F, G, H	IPR014347	Tautomerase/MIF superfamily	Homologous Superfamily
E, F, G, H	IPR004220	5-carboxymethyl-2-hydroxymuconate isomerase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.