4MVJ

2.85 Angstrom Resolution Crystal Structure of Glyceraldehyde 3-phosphate Dehydrogenase A (gapA) from Escherichia coli Modified by Acetyl Phosphate.

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF02800	e4mvjA2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
A	PF00044	e4mvjA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
B	PF02800	e4mvjB2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
B	PF00044	e4mvjB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
C	PF02800	e4mvjC2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
C	PF00044	e4mvjC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
K	PF02800	e4mvjK2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
K	PF00044	e4mvjK1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
N	PF02800	e4mvjN2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
N	PF00044	e4mvjN1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
D	PF02800	e4mvjD2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
D	PF00044	e4mvjD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
L	PF02800	e4mvjL2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
L	PF00044	e4mvjL1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
E	PF02800	e4mvjE2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
E	PF00044	e4mvjE1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
F	PF02800	e4mvjF2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
F	PF00044	e4mvjF1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
J	PF02800	e4mvjJ2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
J	PF00044	e4mvjJ1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
O	PF02800	e4mvjO2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
O	PF00044	e4mvjO1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
G	PF02800	e4mvjG2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
G	PF00044	e4mvjG1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
H	PF02800	e4mvjH2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
H	PF00044	e4mvjH1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
I	PF02800	e4mvjI2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
I	PF00044	e4mvjI1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
M	PF02800	e4mvjM2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
M	PF00044	e4mvjM1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)
P	PF02800	e4mvjP2	A: a+b two layers	X: FwdE/GAPDH domain-like	H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)	T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	F: PF02800	ECOD (1.6)
P	PF00044	e4mvjP1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00044	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
K	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
K	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
N	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
N	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
L	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
L	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
E	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
F	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
F	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
J	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
J	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
O	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
O	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
G	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
H	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
H	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
I	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
I	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
M	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
M	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)
P	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
P	3.30.360.10	Alpha Beta	2-Layer Sandwich	Dihydrodipicolinate Reductase	domain 2	CATH (4.3.0)

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, K, N	ALY	Parent Component: LYS RESID: AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064
E	ALY	Parent Component: LYS RESID: AA0055 , AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064
F, J, O	ALY	Parent Component: LYS RESID: AA0055 , AA0055 , AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064
G	ALY	Parent Component: LYS RESID: AA0055 , AA0055 , AA0055 , AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064
G	SCY	Parent Component: CYS RESID: AA0055 , AA0055 , AA0055 , AA0055 , AA0056 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065
H	ALY	Parent Component: LYS RESID: AA0055 , AA0055 , AA0055 , AA0055 , AA0056 , AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064
H	SCY	Parent Component: CYS RESID: AA0055 , AA0055 , AA0055 , AA0055 , AA0056 , AA0055 , AA0056 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065
I	ALY	Parent Component: LYS RESID: AA0055 , AA0055 , AA0055 , AA0055 , AA0056 , AA0055 , AA0056 , AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064
M	ALY	Parent Component: LYS RESID: AA0055 , AA0055 , AA0055 , AA0055 , AA0056 , AA0055 , AA0056 , AA0055 , AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064
P	ALY	Parent Component: LYS RESID: AA0055 , AA0055 , AA0055 , AA0055 , AA0056 , AA0055 , AA0056 , AA0055 , AA0055 , AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064
P	SCY	Parent Component: CYS RESID: AA0055 , AA0055 , AA0055 , AA0055 , AA0056 , AA0055 , AA0056 , AA0055 , AA0055 , AA0055 , AA0056 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064 , S-acetyl-L-cysteine MOD:00065

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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4MVJ

2.85 Angstrom Resolution Crystal Structure of Glyceraldehyde 3-phosphate Dehydrogenase A (gapA) from Escherichia coli Modified by Acetyl Phosphate.

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Modification Annotation