4KD5
substrate binding domain of putative molybdenum ABC transporter from Clostridium difficile
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | d4kd5c_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | (Clostridioides difficile 630 ) [TaxId: 272563 ], | SCOPe (2.08) |
B [auth A] | d4kd5a_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | (Clostridioides difficile 630 ) [TaxId: 272563 ], | SCOPe (2.08) |
C [auth B] | d4kd5b_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | (Clostridioides difficile 630 ) [TaxId: 272563 ], | SCOPe (2.08) |
D | d4kd5d_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | (Clostridioides difficile 630 ) [TaxId: 272563 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8080514 | 3000083 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8080514 | 3000083 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2 Family | Phosphate binding protein-like | 8080513 | 4000229 | SCOP2 (2022-06-29) |
C [auth B] | SCOP2 Superfamily | Type 2 solute binding protein-like | 8080514 | 3000083 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Type 2 solute binding protein-like | 8080514 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF13531 | e4kd5C2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF13531 | ECOD (1.6) |
B [auth A] | PF13531 | e4kd5A2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF13531 | ECOD (1.6) |
C [auth B] | PF13531 | e4kd5B2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF13531 | ECOD (1.6) |
D | PF13531 | e4kd5D2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF13531 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
B [auth A] | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
C [auth B] | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
D | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth A], C [auth B], D | PF13531 | Bacterial extracellular solute-binding protein (SBP_bac_11) | Bacterial extracellular solute-binding protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth C], B [auth A], C [auth B], D | ABC-type transport system, molybdenum-specific extracellular solute-binding protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth A], C [auth B], D | IPR005950 | Molybdate ABC transporter, substrate-binding protein | Family |
A [auth C], B [auth A], C [auth B], D | IPR041879 | YvgL-like, substrate binding domain | Domain |