4JPB

The structure of a ternary complex between CheA domains P4 and P5 with CheW and with an unzipped fragment of TM14, a chemoreceptor analog from Thermotoga maritima.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth W]	d4jpbw_	All beta proteins	OB-fold	CheW-like	CheW-like	automated matches	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	CheW-like	8041990	3000623	SCOP2B (2022-06-29)
B [auth W]	SCOP2B Superfamily	CheW-like	8038860	3000623	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01584	e4jpbA1	A: beta barrels	X: OB-fold	H: CheW (From Topology)	T: CheW	F: PF01584	ECOD (1.6)
B [auth W]	F_UNCLASSIFIED	e4jpbW3	A: beta barrels	X: OB-fold	H: CheW (From Topology)	T: CheW	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth W]	PF01584	e4jpbW2	A: beta barrels	X: OB-fold	H: CheW (From Topology)	T: CheW	F: PF01584	ECOD (1.6)
C [auth B]	PF00015	e4jpbB1	A: alpha bundles	X: Long alpha-hairpin	H: GreA transcript cleavage protein, N-terminal domain (From Topology)	T: GreA transcript cleavage protein, N-terminal domain	F: PF00015	ECOD (1.6)
D [auth C]	PF00015	e4jpbC1	A: alpha bundles	X: Long alpha-hairpin	H: GreA transcript cleavage protein, N-terminal domain (From Topology)	T: GreA transcript cleavage protein, N-terminal domain	F: PF00015	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth W]	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
B [auth W]	2.40.50.180	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	CheA-289, Domain 4	CATH (4.3.0)
C [auth B]	6.10.250.3200	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D [auth C]	6.10.250.3200	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	Domain
A	PF01584	CheW-like domain (CheW)	CheW-like domain	CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related pr ...	CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA [1] binds to CheW, suggesting that these domains can interact with each other.	Domain
B [auth W]	PF01584	CheW-like domain (CheW)	CheW-like domain	CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related pr ...	CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA [1] binds to CheW, suggesting that these domains can interact with each other.	Domain
C [auth B], D [auth C]	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)	Methyl-accepting chemotaxis protein (MCP) signalling domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Chemotaxis protein CheA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein binding protein domain specific binding catalytic activity, acting on a protein small molecule sensor activity kinase activity protein kinase activity transferase activity phosphotransferase activity, nitrogenous group as acceptor phosphotransferase activity, alcohol group as acceptor protein histidine kinase activity transferase activity, transferring phosphorus-containing groups phosphorelay sensor kinase activity catalytic activity	chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion	intracellular anatomical structure cytoplasm cellular anatomical entity
B [auth W]	Chemotaxis protein CheW	protein binding binding protein domain specific binding	chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation cellular process signal transduction cell communication	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol
C [auth B], D [auth C]	Methyl-accepting chemotaxis protein	-	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037006	Histidine kinase CheA-like, homodimeric domain superfamily	Homologous Superfamily
A	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	Domain
A	IPR004105	Histidine kinase CheA-like, homodimeric domain	Domain
A	IPR003594	Histidine kinase/HSP90-like ATPase	Domain
A	IPR036097	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Homologous Superfamily
A	IPR036061	CheW-like domain superfamily	Homologous Superfamily
A	IPR037052	Chemotaxis protein CheA, P2 response regulator-binding domain superfamily	Homologous Superfamily
A	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
A	IPR010808	Chemotaxis protein CheA, P2 response regulator-binding	Domain
A	IPR002545	CheW-like domain	Domain
A	IPR005467	Histidine kinase domain	Domain
A	IPR036641	HPT domain superfamily	Homologous Superfamily
A	IPR008207	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	Domain
A	IPR035891	CheY-binding domain of CheA	Homologous Superfamily
B [auth W]	IPR039315	Chemotaxis protein CheW	Family
B [auth W]	IPR002545	CheW-like domain	Domain
B [auth W]	IPR036061	CheW-like domain superfamily	Homologous Superfamily
C [auth B], D [auth C]	IPR004089	Methyl-accepting chemotaxis protein (MCP) signalling domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.