4JG5

Crystal structure of a putative cell adhesion protein (BDI_3519) from Parabacteroides distasonis ATCC 8503 at 2.34 A resolution (PSI Community Target, Nakayama)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF06321e4jg5A2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: PF06321ECOD (1.6)
APF21489e4jg5A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: PF21489ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.2580 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
A2.60.40.3690 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF06321Major fimbrial subunit protein (FimA) (P_gingi_FimA)Major fimbrial subunit protein (FimA)This family consists of several Porphyromonas gingivalis major fimbrial subunit protein (FimA) sequences. Fimbriae of Porphyromonas gingivalis, a periodontopathogen, play an important role in its adhesion to and invasion of host cells. The fimA genes ...This family consists of several Porphyromonas gingivalis major fimbrial subunit protein (FimA) sequences. Fimbriae of Porphyromonas gingivalis, a periodontopathogen, play an important role in its adhesion to and invasion of host cells. The fimA genes encoding fimbrillin (FimA), a subunit protein of fimbriae, have been classified into five types, types I to V, based on nucleotide sequences. It has been found that type II FimA can bind to epithelial cells most efficiently through specific host receptors [1]. Human dental plaque is a multispecies microbial biofilm that is associated with two common oral diseases, dental caries and periodontal disease. There is an inter-species contact-dependent communication system between P. gingivalis and S. cristatus that involces the Arc-A enzyme [2].
Domain
PF21489Fimbrium tip subunit Fim1C-like, C-terminal domain (Fim1C-like_C)Fimbrium tip subunit Fim1C-like, C-terminal domainThis domain is found at the C-terminal end of the putative fimbrium tip subunit Fim1C from Parabacteroides distasonis, and similar proteins from bacteroidetes. Fim1C is thought to be a component of the fimbrium tip that plays a role on the mediation ...This domain is found at the C-terminal end of the putative fimbrium tip subunit Fim1C from Parabacteroides distasonis, and similar proteins from bacteroidetes. Fim1C is thought to be a component of the fimbrium tip that plays a role on the mediation of cell adhesion and biofilm formation. This domain shows transthyretin-like fold that contains seven core beta- strands arranged in two beta-sheets [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Putative cell adhesion protein- -