4GR4
Crystal structure of SlgN1deltaAsub
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | AMP-binding enzyme-like | 8097570 | 3001902 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MbtH-like | 8101066 | 3000984 | SCOP2B (2022-06-29) |
C | SCOP2 Family | AMP-binding enzyme-like | 8097569 | 4002922 | SCOP2 (2022-06-29) |
C | SCOP2 Family | MbtH-like | 8101065 | 4002237 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | AMP-binding enzyme-like | 8097570 | 3001902 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | MbtH-like | 8101066 | 3000984 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | AMP-binding enzyme-like | 8097570 | 3001902 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | MbtH-like | 8101066 | 3000984 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | MbtH-like | 8101066 | 3000984 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | AMP-binding enzyme-like | 8097570 | 3001902 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | F_UNCLASSIFIED | e4gr4B1 | A: beta barrels | X: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | T: beta-barrel domain in acetyl-CoA synthetase-like proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF03621 | e4gr4B4 | A: a+b two layers | X: L9 N-domain-like | H: MbtH-like (From Topology) | T: MbtH-like | F: PF03621 | ECOD (1.6) |
B | PF00501 | e4gr4B3 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: PF00501 | ECOD (1.6) |
C | F_UNCLASSIFIED | e4gr4C5 | A: beta barrels | X: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | T: beta-barrel domain in acetyl-CoA synthetase-like proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF03621 | e4gr4C4 | A: a+b two layers | X: L9 N-domain-like | H: MbtH-like (From Topology) | T: MbtH-like | F: PF03621 | ECOD (1.6) |
C | PF00501 | e4gr4C3 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: PF00501 | ECOD (1.6) |
A | F_UNCLASSIFIED | e4gr4A1 | A: beta barrels | X: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | T: beta-barrel domain in acetyl-CoA synthetase-like proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF03621 | e4gr4A4 | A: a+b two layers | X: L9 N-domain-like | H: MbtH-like (From Topology) | T: MbtH-like | F: PF03621 | ECOD (1.6) |
A | PF00501 | e4gr4A3 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: PF00501 | ECOD (1.6) |
D | F_UNCLASSIFIED | e4gr4D1 | A: beta barrels | X: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | T: beta-barrel domain in acetyl-CoA synthetase-like proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF03621 | e4gr4D4 | A: a+b two layers | X: L9 N-domain-like | H: MbtH-like (From Topology) | T: MbtH-like | F: PF03621 | ECOD (1.6) |
D | PF00501 | e4gr4D3 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: PF00501 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.90.820.10 | Alpha Beta | Alpha-Beta Complex | Rubredoxin-like | Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | CATH (4.3.0) |
B | 3.40.50.12780 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | ANL, N-terminal domain | CATH (4.3.0) |
C | 3.90.820.10 | Alpha Beta | Alpha-Beta Complex | Rubredoxin-like | Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | CATH (4.3.0) |
C | 3.40.50.12780 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | ANL, N-terminal domain | CATH (4.3.0) |
A | 3.90.820.10 | Alpha Beta | Alpha-Beta Complex | Rubredoxin-like | Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | CATH (4.3.0) |
A | 3.40.50.12780 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | ANL, N-terminal domain | CATH (4.3.0) |
D | 3.90.820.10 | Alpha Beta | Alpha-Beta Complex | Rubredoxin-like | Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | CATH (4.3.0) |
D | 3.40.50.12780 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | ANL, N-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00501 | AMP-binding enzyme (AMP-binding) | AMP-binding enzyme | - | Family | |
PF03621 | MbtH-like protein (MbtH) | MbtH-like protein | This domain is found in the MbtH protein Swiss:O05821 as well as at the N terminus of the antibiotic synthesis protein NIKP1. MbtH and its homologues were first noted in gene clusters involved in non-ribosomal peptides and other secondary metabolites ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Non-ribosomal peptide synthetase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020845 | AMP-binding, conserved site | Conserved Site | |
IPR038020 | MbtH-like domain superfamily | Homologous Superfamily | |
IPR045851 | AMP-binding enzyme, C-terminal domain superfamily | Homologous Superfamily | |
IPR042099 | ANL, N-terminal domain | Homologous Superfamily | |
IPR003043 | Uroporphiryn-III C-methyltransferase, conserved site | Conserved Site | |
IPR005153 | MbtH-like domain | Domain | |
IPR025110 | AMP-binding enzyme, C-terminal domain | Domain | |
IPR000873 | AMP-dependent synthetase/ligase domain | Domain | |
IPR010071 | Amino acid adenylation domain | Domain |