4G9I

Crystal structure of T.kodakarensis HypF

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YgjD/Kae1-like	8092453	4000383	SCOP2 (2022-06-29)
A	SCOP2 Family	Acylphosphatase-like	8049601	4000382	SCOP2 (2022-06-29)
A	SCOP2 Family	YrdC/Sua5-like	8092451	4000384	SCOP2 (2022-06-29)
A	SCOP2 Family	HypF zinc finger	8092447	4000385	SCOP2 (2022-06-29)
A	SCOP2 Family	HypF zinc finger	8092448	4000385	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Actin-like ATPases	8092454	3000092	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Actin-like ATPases	8092455	3000092	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Acylphosphatase/BLUF domain-like	8092446	3000165	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YrdC/RibB-like	8092452	3000166	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HypF zinc finger	8092449	3002027	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HypF zinc finger	8092450	3002027	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8092454	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HypF zinc finger	8092449	3002027	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8092455	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YrdC/RibB-like	8092452	3000166	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8092446	3000165	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HypF zinc finger	8092450	3002027	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8092455	3000092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8092446	3000165	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HypF zinc finger	8092449	3002027	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YrdC/RibB-like	8092452	3000166	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HypF zinc finger	8092450	3002027	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8092454	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8092455	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8092454	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8092446	3000165	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HypF zinc finger	8092450	3002027	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YrdC/RibB-like	8092452	3000166	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HypF zinc finger	8092449	3002027	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8092446	3000165	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	HypF zinc finger	8092449	3002027	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Actin-like ATPases	8092454	3000092	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YrdC/RibB-like	8092452	3000166	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Actin-like ATPases	8092455	3000092	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	HypF zinc finger	8092450	3002027	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	HypF zinc finger	8092449	3002027	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8092446	3000165	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Actin-like ATPases	8092454	3000092	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	HypF zinc finger	8092450	3002027	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Actin-like ATPases	8092455	3000092	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	YrdC/RibB-like	8092452	3000166	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00708	e4g9iA5	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: PF00708	ECOD (1.6)
A	PF01300	e4g9iA7	A: a+b complex topology	X: YrdC/RibB (From Topology)	H: YrdC/RibB (From Topology)	T: YrdC/RibB	F: PF01300	ECOD (1.6)
A	PF17788	e4g9iA9	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF17788	ECOD (1.6)
A	PF22521	e4g9iA8	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF22521	ECOD (1.6)
A	PF07503	e4g9iA6	A: few secondary structure elements	X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	T: Zinc finger domain in hydrogenase maturation protein HypF	F: PF07503	ECOD (1.6)
B	PF00708	e4g9iB6	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: PF00708	ECOD (1.6)
B	PF01300	e4g9iB8	A: a+b complex topology	X: YrdC/RibB (From Topology)	H: YrdC/RibB (From Topology)	T: YrdC/RibB	F: PF01300	ECOD (1.6)
B	PF17788	e4g9iB14	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF17788	ECOD (1.6)
B	PF22521	e4g9iB13	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF22521	ECOD (1.6)
B	PF07503	e4g9iB7	A: few secondary structure elements	X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	T: Zinc finger domain in hydrogenase maturation protein HypF	F: PF07503	ECOD (1.6)
C	PF00708	e4g9iC12	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: PF00708	ECOD (1.6)
C	PF01300	e4g9iC14	A: a+b complex topology	X: YrdC/RibB (From Topology)	H: YrdC/RibB (From Topology)	T: YrdC/RibB	F: PF01300	ECOD (1.6)
C	PF17788	e4g9iC16	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF17788	ECOD (1.6)
C	PF22521	e4g9iC15	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF22521	ECOD (1.6)
C	PF07503	e4g9iC13	A: few secondary structure elements	X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	T: Zinc finger domain in hydrogenase maturation protein HypF	F: PF07503	ECOD (1.6)
D	PF00708	e4g9iD6	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: PF00708	ECOD (1.6)
D	PF01300	e4g9iD8	A: a+b complex topology	X: YrdC/RibB (From Topology)	H: YrdC/RibB (From Topology)	T: YrdC/RibB	F: PF01300	ECOD (1.6)
D	PF17788	e4g9iD10	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF17788	ECOD (1.6)
D	PF22521	e4g9iD9	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF22521	ECOD (1.6)
D	PF07503	e4g9iD7	A: few secondary structure elements	X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	T: Zinc finger domain in hydrogenase maturation protein HypF	F: PF07503	ECOD (1.6)
E	PF00708	e4g9iE6	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: PF00708	ECOD (1.6)
E	PF01300	e4g9iE8	A: a+b complex topology	X: YrdC/RibB (From Topology)	H: YrdC/RibB (From Topology)	T: YrdC/RibB	F: PF01300	ECOD (1.6)
E	PF17788	e4g9iE10	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF17788	ECOD (1.6)
E	PF22521	e4g9iE9	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF22521	ECOD (1.6)
E	PF07503	e4g9iE7	A: few secondary structure elements	X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	T: Zinc finger domain in hydrogenase maturation protein HypF	F: PF07503	ECOD (1.6)
F	PF00708	e4g9iF6	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: PF00708	ECOD (1.6)
F	PF01300	e4g9iF8	A: a+b complex topology	X: YrdC/RibB (From Topology)	H: YrdC/RibB (From Topology)	T: YrdC/RibB	F: PF01300	ECOD (1.6)
F	PF17788	e4g9iF10	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF17788	ECOD (1.6)
F	PF22521	e4g9iF9	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF22521	ECOD (1.6)
F	PF07503	e4g9iF7	A: few secondary structure elements	X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology)	T: Zinc finger domain in hydrogenase maturation protein HypF	F: PF07503	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF07503	HypF finger (zf-HYPF)	HypF finger	The HypF family of proteins are involved in the maturation and regulation of hydrogenase ([1]). In the N-terminus they appear to have two Zinc finger domains, as modelled by this family.	Domain
A, B, C, D, E A, B, C, D, E, F	PF17788	HypF Kae1-like domain (HypF_C)	HypF Kae1-like domain	This domain is found in the HypF protein. In the structure it is one of the two subdomains of the Kae1 domain [1].	Domain
A, B, C, D, E A, B, C, D, E, F	PF00708	Acylphosphatase (Acylphosphatase)	Acylphosphatase	-	Domain
A, B, C, D, E A, B, C, D, E, F	PF01300	Telomere recombination (Sua5_yciO_yrdC)	Telomere recombination	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Hydrogenase maturation protein HypF	RNA binding double-stranded RNA binding binding organic cyclic compound binding nucleic acid binding carboxyl- or carbamoyltransferase activity transferase activity, transferring one-carbon groups transferase activity catalytic activity pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides acylphosphatase activity hydrolase activity hydrolase activity, acting on acid anhydrides RNA binding double-stranded RNA binding binding organic cyclic compound binding nucleic acid binding carboxyl- or carbamoyltransferase activity transferase activity, transferring one-carbon groups transferase activity catalytic activity pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides acylphosphatase activity hydrolase activity hydrolase activity, acting on acid anhydrides ligase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR041440	HypF, Kae1-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR036046	Acylphosphatase-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR004421	Carbamoyltransferase, HypF-type	Family
A, B, C, D, E A, B, C, D, E, F	IPR017945	DHBP synthase RibB-like alpha/beta domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR006070	Threonylcarbamoyl-AMP synthase-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR011125	Zinc finger, HypF-type	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001792	Acylphosphatase-like domain	Domain