4FD2
Crystal structure of the C-terminal domain of ClpB
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040005 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040005 | 3002019 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040005 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF10431 | e4fd2A1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF10431 | ECOD (1.6) |
A | PF07724 | e4fd2A2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF07724 | ECOD (1.6) |
B | PF10431 | e4fd2B1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF10431 | ECOD (1.6) |
B | PF07724 | e4fd2B2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF07724 | ECOD (1.6) |
C [auth D] | PF10431 | e4fd2D1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF10431 | ECOD (1.6) |
C [auth D] | PF07724 | e4fd2D2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF07724 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
C [auth D] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
C [auth D] | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, C [auth D] | PF10431 | C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) | C-terminal, D2-small domain, of ClpB protein | This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ... | Domain |
A, B, C [auth D] | PF07724 | AAA domain (Cdc48 subfamily) (AAA_2) | AAA domain (Cdc48 subfamily) | This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, C [auth D] | IPR001270 | ClpA/B family | Family |
A, B, C [auth D] | IPR018368 | ClpA/B, conserved site 1 | Conserved Site |
A, B, C [auth D] | IPR041546 | ClpA/ClpB, AAA lid domain | Domain |
A, B, C [auth D] | IPR004176 | Clp, repeat (R) domain | Domain |
A, B, C [auth D] | IPR028299 | ClpA/B, conserved site 2 | Conserved Site |
A, B, C [auth D] | IPR017730 | Chaperonin ClpB | Family |
A, B, C [auth D] | IPR003593 | AAA+ ATPase domain | Domain |
A, B, C [auth D] | IPR003959 | ATPase, AAA-type, core | Domain |
A, B, C [auth D] | IPR019489 | Clp ATPase, C-terminal | Domain |
A, B, C [auth D] | IPR036628 | Clp, N-terminal domain superfamily | Homologous Superfamily |
A, B, C [auth D] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |