4F3M
Crystal structure of CRISPR-associated protein
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4f3ma_ | Alpha and beta proteins (a+b) | Ferredoxin-like | Ferredoxin-like domains from CRISPR-associated proteins | CRISPR-associated protein Cas5d-like | CRISPR-associated protein Cas5d | (Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ], | SCOPe (2.08) |
B | d4f3mb_ | Alpha and beta proteins (a+b) | Ferredoxin-like | Ferredoxin-like domains from CRISPR-associated proteins | CRISPR-associated protein Cas5d-like | CRISPR-associated protein Cas5d | (Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Cas5-like | 8045427 | 4004469 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CRISPR-associated proteins | 8052176 | 3001554 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | CRISPR-associated proteins | 8052176 | 3001554 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF09704 | e4f3mA1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR system Cas5 homologs (From Topology) | T: CRISPR system Cas5 homologs | F: PF09704 | ECOD (1.6) |
B | PF09704 | e4f3mB1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR system Cas5 homologs (From Topology) | T: CRISPR system Cas5 homologs | F: PF09704 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.2660 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B | 3.30.70.2660 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09704 | CRISPR-associated protein (Cas_Cas5) (Cas_Cas5d) | CRISPR-associated protein (Cas_Cas5) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR021124 | CRISPR-associated protein, Cas5 | Family | |
IPR010155 | CRISPR pre-crRNA endoribonuclease Cas5d | Family | |
IPR013422 | CRISPR-associated protein Cas5, N-terminal | Domain |