4DOZ
Crystal structure of Pyrococcus furiosus Cmr2 (Cas10)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4doza1 | All alpha proteins | Four-helical up-and-down bundle | Helical bundle domains from Csm1/Cmr1-like | automated matches | automated matches | (Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ], | SCOPe (2.08) |
A | d4doza2 | Alpha and beta proteins (a+b) | Ferredoxin-like | Ferredoxin-like domains from CRISPR-associated proteins | Nucleotide cyclase domains from Cmr2-like | automated matches | (Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8052174 | 3001272 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF20824 | e4dozA3 | A: alpha bundles | X: CRISPR RNA silencing complex Cmr2 subunit second helical domain (From Topology) | H: CRISPR RNA silencing complex Cmr2 subunit second helical domain (From Topology) | T: CRISPR RNA silencing complex Cmr2 subunit second helical domain | F: PF20824 | ECOD (1.6) |
A | PF20822 | e4dozA4 | A: alpha bundles | X: CRISPR RNA silencing complex Cmr2 subunit first helical domain (From Topology) | H: CRISPR RNA silencing complex Cmr2 subunit first helical domain (From Topology) | T: CRISPR RNA silencing complex Cmr2 subunit first helical domain | F: PF20822 | ECOD (1.6) |
A | PF12469 | e4dozA1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF12469 | ECOD (1.6) |
A | PF22335 | e4dozA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF22335 | ECOD (1.6) |
A | PF20823 | e4dozA5 | A: few secondary structure elements | X: CRISPR RNA silencing complex Cmr2 subunit Zn-binding domain (From Topology) | H: CRISPR RNA silencing complex Cmr2 subunit Zn-binding domain (From Topology) | T: CRISPR RNA silencing complex Cmr2 subunit Zn-binding domain | F: PF20823 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.2220 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CRISPR-Cas system, Cmr2 subunit, D1 domain, cysteine cluster | CATH (4.3.0) |
A | 1.10.10.1720 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CRISPR-Cas system, Cmr2 subunit, D2 domain, helical bundle | CATH (4.3.0) |
A | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
A | 1.20.120.1260 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CRISPR-Cas system, Cmr2 subunit, D4 domain, six-helix bundle | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20822 | CRISPR RNA silencing complex Cmr2 subunit, first helical domain (Cmr2_hel_dom1) | CRISPR RNA silencing complex Cmr2 subunit, first helical domain | The prokaryotic CRISPR RNA-Cas protein (Cmr) complex provides protection against mobile genetic elements by cleaving foreign RNA. Its largest subunit is Cmr2. This protein shows a N-terminal HD (histidine-aspartate) domain, two RRM domains resembling ... | Domain | |
PF20824 | CRISPR RNA silencing complex Cmr2 subunit, second helical domain (Cmr2_hel_dom2) | CRISPR RNA silencing complex Cmr2 subunit, second helical domain | The prokaryotic CRISPR RNA-Cas protein (Cmr) complex provides protection against mobile genetic elements by cleaving foreign RNA. Its largest subunit is Cmr2. This protein shows a N-terminal HD (histidine-aspartate) domain, two RRM domains resembling ... | Domain | |
PF12469 | CRISPR-associated protein Cmr2, N-terminal (Cmr2_N) | CRISPR-associated protein Cmr2, N-terminal | This domain family is typically between 101 and 138 amino acids in length and it is found in subunit Crm2 of the CRISPR RNA-Cas protein complex (Cmr complex) [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Putative uncharacterized protein |
|
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR024615 | CRISPR-associated protein Cmr2, N-terminal | Domain | |
IPR000160 | GGDEF domain | Domain | |
IPR048690 | CRISPR RNA silencing complex Cmr2 subunit, Zn-binding domain | Domain | |
IPR048693 | CRISPR RNA silencing complex Cmr2-like, C-terminal domain | Domain | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR038242 | CRISPR-Cas system, Cmr2 subunit, D1 domain, cysteine cluster | Homologous Superfamily | |
IPR013407 | CRISPR-associated protein Cmr2 | Family | |
IPR048694 | CRISPR RNA silencing complex Cmr2 subunit, first helical domain | Domain |