4BUC
CRYSTAL STRUCTURE OF MURD LIGASE FROM THERMOTOGA MARITIMA IN APO FORM
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF21377 | e4bucA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: MurCD/PglD N-terminal domain-like | F: PF21377 | ECOD (1.6) |
A | PF08245 | e4bucA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF08245 | ECOD (1.6) |
A | PF02875 | e4bucA1 | A: a/b three-layered sandwiches | X: MurD-like peptide ligases, peptide-binding domain (From Topology) | H: MurD-like peptide ligases, peptide-binding domain (From Topology) | T: MurD-like peptide ligases, peptide-binding domain | F: PF02875 | ECOD (1.6) |
B | PF21377 | e4bucB3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: MurCD/PglD N-terminal domain-like | F: PF21377 | ECOD (1.6) |
B | PF08245 | e4bucB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF08245 | ECOD (1.6) |
B | PF02875 | e4bucB1 | A: a/b three-layered sandwiches | X: MurD-like peptide ligases, peptide-binding domain (From Topology) | H: MurD-like peptide ligases, peptide-binding domain (From Topology) | T: MurD-like peptide ligases, peptide-binding domain | F: PF02875 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
A | 3.40.1190.10 | Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Mur-like, catalytic domain | CATH (4.3.0) |
A | 3.90.190.20 | Alpha Beta | Alpha-Beta Complex | Protein-Tyrosine Phosphatase | Chain A | CATH (4.3.0) |
B | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
B | 3.40.1190.10 | Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Mur-like, catalytic domain | CATH (4.3.0) |
B | 3.90.190.20 | Alpha Beta | Alpha-Beta Complex | Protein-Tyrosine Phosphatase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08245 | Mur ligase middle domain (Mur_ligase_M) | Mur ligase middle domain | - | Domain | |
PF21377 | MurD N-terminal domain (MurD_N) | MurD N-terminal domain | This is the N-terminal catalytic domain of MurD ligases [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036615 | Mur ligase, C-terminal domain superfamily | Homologous Superfamily | |
IPR013221 | Mur ligase, central | Domain | |
IPR036565 | Mur-like, catalytic domain superfamily | Homologous Superfamily | |
IPR005762 | UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD | Family |