4BBL

Cryo-electron microscopy reconstruction of the helical part of influenza A virus ribonucleoprotein isolated from virions.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Flu NP-like	8034575	3001484	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Flu_NP_2nd	e4bblA1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
A	Flu_NP_1st	e4bblA2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
B	Flu_NP_2nd	e4bblB6	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
B	Flu_NP_1st	e4bblB5	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
C	Flu_NP_2nd	e4bblC1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
C	Flu_NP_1st	e4bblC2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
E	Flu_NP_2nd	e4bblE1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
E	Flu_NP_1st	e4bblE2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
G	Flu_NP_2nd	e4bblG1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
G	Flu_NP_1st	e4bblG2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
H	Flu_NP_2nd	e4bblH1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
H	Flu_NP_1st	e4bblH2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
I	Flu_NP_2nd	e4bblI1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
I	Flu_NP_1st	e4bblI2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
K	Flu_NP_2nd	e4bblK1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
K	Flu_NP_1st	e4bblK2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
L	Flu_NP_2nd	e4bblL1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
L	Flu_NP_1st	e4bblL2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
M	Flu_NP_2nd	e4bblM1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
M	Flu_NP_1st	e4bblM2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
N	Flu_NP_2nd	e4bblN1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
N	Flu_NP_1st	e4bblN2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
R	Flu_NP_2nd	e4bblR1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
R	Flu_NP_1st	e4bblR2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
U	Flu_NP_2nd	e4bblU1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
U	Flu_NP_1st	e4bblU2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
V	Flu_NP_2nd	e4bblV1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
V	Flu_NP_1st	e4bblV2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
W	Flu_NP_2nd	e4bblW4	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
W	Flu_NP_1st	e4bblW3	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
D	Flu_NP_2nd	e4bblD1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
D	Flu_NP_1st	e4bblD2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
F	Flu_NP_2nd	e4bblF1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
F	Flu_NP_1st	e4bblF2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
J	Flu_NP_2nd	e4bblJ1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
J	Flu_NP_1st	e4bblJ2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
O	Flu_NP_2nd	e4bblO1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
O	Flu_NP_1st	e4bblO2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
P	Flu_NP_2nd	e4bblP1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
P	Flu_NP_1st	e4bblP2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
Q	Flu_NP_2nd	e4bblQ1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
Q	Flu_NP_1st	e4bblQ2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
S	Flu_NP_2nd	e4bblS1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
S	Flu_NP_1st	e4bblS2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
T	Flu_NP_2nd	e4bblT1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
T	Flu_NP_1st	e4bblT2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)
X	Flu_NP_2nd	e4bblX1	A: alpha bundles	X: Helical bundle in flu nucleocapsid protein (From Topology)	H: Helical bundle in flu nucleocapsid protein (From Topology)	T: Helical bundle in flu nucleocapsid protein	F: Flu_NP_2nd	ECOD (1.6)
X	Flu_NP_1st	e4bblX2	A: a+b complex topology	X: Flu NP-like (From Topology)	H: Flu NP-like (From Topology)	T: Flu NP-like	F: Flu_NP_1st	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF00506	Influenza virus nucleoprotein (Flu_NP)	Influenza virus nucleoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	NUCLEOPROTEIN	structural molecule activity RNA binding binding organic cyclic compound binding nucleic acid binding identical protein binding protein binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction viral penetration into host nucleus intracellular transport of virus transport of virus	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component helical viral capsid
Y, Z	RNA	-	-	-