4A2W
Structure of full-length duck RIG-I
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4a2wa3 | All alpha proteins | DEATH domain | DEATH domain | Caspase recruitment domain, CARD | Retinoic acid-inducible gene I (RIG-I) helicase | MALLARD DUCK (Anas platyrhynchos ) [TaxId: 8839 ], | SCOPe (2.08) |
A | d4a2wa1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Tandem AAA-ATPase domain | Retinoic acid-inducible gene I (RIG-I) helicase | MALLARD DUCK (Anas platyrhynchos ) [TaxId: 8839 ], | SCOPe (2.08) |
A | d4a2wa5 | Artifacts | Tags | Tags | Tags | N-terminal Tags | MALLARD DUCK (Anas platyrhynchos ) [TaxId: 8839 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8092829 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DEATH domain | 8092825 | 3000069 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8092828 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DEATH domain | 8092826 | 3000069 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8092829 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8092828 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DEATH domain | 8092826 | 3000069 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DEATH domain | 8092825 | 3000069 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16739 | e4a2wA1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF16739 | ECOD (1.6) |
A | PF18119 | e4a2wA5 | A: alpha bundles | X: Helical bundle insertion in helicase domains | H: Helical bundle in Hef helicase (From Topology) | T: Helical bundle in Hef helicase | F: PF18119 | ECOD (1.6) |
A | PF00270 | e4a2wA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00270 | ECOD (1.6) |
A | PF00271 | e4a2wA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00271 | ECOD (1.6) |
B | PF16739 | e4a2wB5 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF16739 | ECOD (1.6) |
B | PF18119 | e4a2wB4 | A: alpha bundles | X: Helical bundle insertion in helicase domains | H: Helical bundle in Hef helicase (From Topology) | T: Helical bundle in Hef helicase | F: PF18119 | ECOD (1.6) |
B | PF00270 | e4a2wB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00270 | ECOD (1.6) |
B | PF00271 | e4a2wB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00271 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.533.10 | Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas | CATH (4.3.0) |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.20.1320.30 | Mainly Alpha | Up-down Bundle | phosphoenolpyruvate carboxylase, domain 3 | CATH (4.3.0) | |
B | 1.10.533.10 | Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 1.20.1320.30 | Mainly Alpha | Up-down Bundle | phosphoenolpyruvate carboxylase, domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16739 | Caspase recruitment domain (CARD_2) | Caspase recruitment domain | In the probable ATP-dependent RNA helicase DDX58 this CARD domain is found near the N-terminus and interacts with the C-terminal domain [1]. | Domain | |
PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain | |
PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain | |
PF18119 | RIG-I receptor C-terminal domain (RIG-I_C) | RIG-I receptor C-terminal domain | This is the C-terminal domain of Innate Immune Pattern-Recognition Receptor RIG-I present in homo sapiens. RIG-I is a key cytosolic pattern-recognition receptors of the vertebrate innate immune system that form the first line of defense against RNA v ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038557 | RIG-I-like receptor, C-terminal domain superfamily | Homologous Superfamily | |
IPR021673 | RIG-I-like receptor, C-terminal regulatory domain | Domain | |
IPR031964 | Caspase recruitment domain | Domain | |
IPR011029 | Death-like domain superfamily | Homologous Superfamily | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR042145 | RIG-I, CARD domain repeat 2 | Domain | |
IPR041204 | RIG-I-like receptor, C-terminal | Domain | |
IPR011545 | DEAD/DEAH box helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |