3WXM
Crystal structure of archaeal Pelota and GTP-bound EF1 alpha complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056521 | 3002024 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056520 | 3002022 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056523 | 3002024 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056523 | 3002024 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056520 | 3002022 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056521 | 3002024 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056523 | 3002024 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056521 | 3002024 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056520 | 3002022 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056520 | 3002022 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056521 | 3002024 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056523 | 3002024 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | PF03144 | e3wxmE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
E | PF22594 | e3wxmE3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF22594 | ECOD (1.6) |
E | PF00009 | e3wxmE2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
A | PF03144 | e3wxmA2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
A | PF22594 | e3wxmA3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF22594 | ECOD (1.6) |
A | PF00009 | e3wxmA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
C | PF03144 | e3wxmC3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
C | PF22594 | e3wxmC2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF22594 | ECOD (1.6) |
C | PF00009 | e3wxmC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
G | PF03144 | e3wxmG3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
G | PF22594 | e3wxmG2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF22594 | ECOD (1.6) |
G | PF00009 | e3wxmG1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
B | PF03463 | e3wxmB1 | A: beta barrels | X: SH3 | H: Dom34/Pelota N-terminal domain-like (From Topology) | T: Dom34/Pelota N-terminal domain-like | F: PF03463 | ECOD (1.6) |
B | PF03465 | e3wxmB2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF03465 | ECOD (1.6) |
B | PF03464 | e3wxmB3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF03464 | ECOD (1.6) |
D | PF03463 | e3wxmD1 | A: beta barrels | X: SH3 | H: Dom34/Pelota N-terminal domain-like (From Topology) | T: Dom34/Pelota N-terminal domain-like | F: PF03463 | ECOD (1.6) |
D | PF03465 | e3wxmD2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF03465 | ECOD (1.6) |
D | PF03464 | e3wxmD3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF03464 | ECOD (1.6) |
F | PF03463 | e3wxmF3 | A: beta barrels | X: SH3 | H: Dom34/Pelota N-terminal domain-like (From Topology) | T: Dom34/Pelota N-terminal domain-like | F: PF03463 | ECOD (1.6) |
F | PF03465 | e3wxmF2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF03465 | ECOD (1.6) |
F | PF03464 | e3wxmF1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF03464 | ECOD (1.6) |
H | PF03463 | e3wxmH2 | A: beta barrels | X: SH3 | H: Dom34/Pelota N-terminal domain-like (From Topology) | T: Dom34/Pelota N-terminal domain-like | F: PF03463 | ECOD (1.6) |
H | PF03465 | e3wxmH3 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF03465 | ECOD (1.6) |
H | PF03464 | e3wxmH1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF03464 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain | |
PF03143 | Elongation factor Tu C-terminal domain (GTP_EFTU_D3) | Elongation factor Tu C-terminal domain | Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2]. | Domain | |
PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain | |
PF03465 | eRF1 domain 3 (eRF1_3) | eRF1 domain 3 | The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ... | Domain | |
PF03463 | eRF1 domain 1 (eRF1_1) | eRF1 domain 1 | The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ... | Domain |