3VPJ
crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa in complex with immune protein Tsi1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e3vpjA2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e3vpjB2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth C] | F_UNCLASSIFIED | e3vpjC2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth D] | F_UNCLASSIFIED | e3vpjD2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth E] | PF21565 | e3vpjE1 | A: a+b two layers | X: IF3-like | H: SirA-like (From Topology) | T: SirA-like | F: PF21565 | ECOD (1.6) |
D [auth F] | PF21565 | e3vpjF2 | A: a+b two layers | X: IF3-like | H: SirA-like (From Topology) | T: SirA-like | F: PF21565 | ECOD (1.6) |
G | PF21565 | e3vpjG2 | A: a+b two layers | X: IF3-like | H: SirA-like (From Topology) | T: SirA-like | F: PF21565 | ECOD (1.6) |
H | PF21565 | e3vpjH2 | A: a+b two layers | X: IF3-like | H: SirA-like (From Topology) | T: SirA-like | F: PF21565 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
B | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
E [auth C] | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
F [auth D] | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
C [auth E] | 2.40.128.650 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
D [auth F] | 2.40.128.650 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
G | 2.40.128.650 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
H | 2.40.128.650 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth E], D [auth F], G, H | PF21565 | Immune protein Tsi1 (Tsi1) | Immune protein Tsi1 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B, E [auth C], F [auth D] | type VI secretion exported 1 | - | ||
C [auth E], D [auth F], G, H | Tse1-specific immunity protein | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, E [auth C], F [auth D] | IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily |
C [auth E], D [auth F], G, H | IPR049346 | Immune protein Tsi1-like superfamily | Homologous Superfamily |
C [auth E], D [auth F], G, H | IPR049345 | Immune protein Tsi1 | Family |