3PH1

The Crystal Structure of a Pathogenic Protein from the Xanthomonas campestris Reveals a New Tetrameric PilZ Domain Self-Assembled via a Unusual Helical Bundle


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyPilZ domain-like8091557 3000480 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPilZ domain-like8091557 3000480 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPilZ domain-like8091557 3000480 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPilZ domain-like8091557 3000480 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DPF16823e3ph1D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF16823ECOD (1.6)
APF16823e3ph1A1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF16823ECOD (1.6)
BPF16823e3ph1B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF16823ECOD (1.6)
CPF16823e3ph1C1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF16823ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF16823Atypical PilZ domain, cyclic di-GMP receptor (tPilZ)Atypical PilZ domain, cyclic di-GMP receptorTetrameric PilZ (tPliZ, previously known as PilZ_2) is a family of cyclic di-GMP receptors found in Proteobacteria plant pathogens. tPilZ forms a tetramer that adopts a novel 'house-like' construct, with a central pillar domain of the four vertical a ...Tetrameric PilZ (tPliZ, previously known as PilZ_2) is a family of cyclic di-GMP receptors found in Proteobacteria plant pathogens. tPilZ forms a tetramer that adopts a novel 'house-like' construct, with a central pillar domain of the four vertical alpha3 helices, a roof-top domain made up of the eight inclined alpha2 and alpha4 helices, and four corner-stone domains making up the PilZ domain. Cyclic-di-GMP is a universal secondary messenger molecule extensively involved in regulating bacterial pathogenicity which binds to cytoplasmic receptors containing PilZ domains [1,2]. This domain is referred to as an atypical PilZ domain, it has the same structure as canonical PilZ domains with the exception of a short N-terminal alpha-helix and an insert that forms two additional alpha-helices [2].
Domain

InterPro: Protein Family Classification InterPro Database Homepage