3P4H

Structures of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	LigD phosphoesterase-like	8048542	4006141	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NHEJ phosphoesterases-like	8092048	3002555	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF13298	e3p4hA1	A: beta barrels	X: Oncogene product-like	H: LigD phosphoesterase domain (From Topology)	T: LigD phosphoesterase domain	F: PF13298	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13298	DNA polymerase Ligase (LigD) (LigD_N)	DNA polymerase Ligase (LigD)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	ATP-dependent DNA ligase, N-terminal domain protein	catalytic activity ligase activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR014144	DNA ligase D, 3'-phosphoesterase domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.