3NDY

The structure of the catalytic and carbohydrate binding domain of endoglucanase D from Clostridium cellulovorans

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth E]	d3ndye_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	(Clostridium cellulovorans ) [TaxId: 1493 ],	SCOPe (2.08)
D [auth F]	d3ndyf_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	(Clostridium cellulovorans ) [TaxId: 1493 ],	SCOPe (2.08)
F [auth G]	d3ndyg_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	(Clostridium cellulovorans ) [TaxId: 1493 ],	SCOPe (2.08)
H	d3ndyh_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	(Clostridium cellulovorans ) [TaxId: 1493 ],	SCOPe (2.08)
A	d3ndya_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	automated matches	automated matches	(Clostridium cellulovorans ) [TaxId: 1493 ],	SCOPe (2.08)
C [auth B]	d3ndyb_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	automated matches	automated matches	(Clostridium cellulovorans ) [TaxId: 1493 ],	SCOPe (2.08)
E [auth C]	d3ndyc_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	automated matches	automated matches	(Clostridium cellulovorans ) [TaxId: 1493 ],	SCOPe (2.08)
G [auth D]	d3ndyd_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	automated matches	automated matches	(Clostridium cellulovorans ) [TaxId: 1493 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth E]	SCOP2 Family	cellulose-binding domain family ii	8073522	4002022	SCOP2 (2022-06-29)
B [auth E]	SCOP2 Superfamily	Carbohydrate-binding domain	8073523	3000706	SCOP2 (2022-06-29)
D [auth F]	SCOP2B Superfamily	Carbohydrate-binding domain	8073523	3000706	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	Carbohydrate-binding domain	8073523	3000706	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Carbohydrate-binding domain	8073523	3000706	SCOP2B (2022-06-29)
A	SCOP2 Family	beta-glycanases	8078104	4003164	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	(Trans)glycosidases	8078105	3000313	SCOP2 (2022-06-29)
C [auth B]	SCOP2B Superfamily	(Trans)glycosidases	8078105	3000313	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	(Trans)glycosidases	8078105	3000313	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	(Trans)glycosidases	8078105	3000313	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth E]	PF00553	e3ndyE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: PF00553	ECOD (1.6)
D [auth F]	PF00553	e3ndyF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: PF00553	ECOD (1.6)
F [auth G]	PF00553	e3ndyG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: PF00553	ECOD (1.6)
H	PF00553	e3ndyH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: PF00553	ECOD (1.6)
A	PF00150	e3ndyA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00150	ECOD (1.6)
C [auth B]	PF00150	e3ndyB1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00150	ECOD (1.6)
E [auth C]	PF00150	e3ndyC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00150	ECOD (1.6)
G [auth D]	PF00150	e3ndyD1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00150	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth E]	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
D [auth F]	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
F [auth G]	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
H	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
C [auth B]	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
E [auth C]	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
G [auth D]	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth E], D [auth F], F [auth G], H	PF00553	Cellulose binding domain (CBM_2)	Cellulose binding domain	Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria.	Domain
A, C [auth B], E [auth C], G [auth D]	PF00150	Cellulase (glycosyl hydrolase family 5) (Cellulase)	Cellulase (glycosyl hydrolase family 5)	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth E], D [auth F], F [auth G], H	Endoglucanase D	binding polysaccharide binding carbohydrate binding hydrolase activity, acting on glycosyl bonds cellulase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process organic substance metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellulose catabolic process carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process organic substance metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellulose catabolic process macromolecule metabolic process organic substance catabolic process cellulose metabolic process	-
A, C [auth B], E [auth C], G [auth D]	Endoglucanase D	binding polysaccharide binding carbohydrate binding hydrolase activity, acting on glycosyl bonds cellulase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process organic substance metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellulose catabolic process carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process organic substance metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellulose catabolic process macromolecule metabolic process organic substance catabolic process cellulose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth E], D [auth F], F [auth G], H	IPR012291	CBM2, carbohydrate-binding domain superfamily	Homologous Superfamily
B [auth E], D [auth F], F [auth G], H	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
B [auth E], D [auth F], F [auth G], H	IPR001547	Glycoside hydrolase, family 5	Domain
B [auth E], D [auth F], F [auth G], H	IPR018087	Glycoside hydrolase, family 5, conserved site	Conserved Site
B [auth E], D [auth F], F [auth G], H	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily
B [auth E], D [auth F], F [auth G], H	IPR001919	Carbohydrate-binding type-2 domain	Domain
A, C [auth B], E [auth C], G [auth D]	IPR012291	CBM2, carbohydrate-binding domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D]	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D]	IPR001547	Glycoside hydrolase, family 5	Domain
A, C [auth B], E [auth C], G [auth D]	IPR018087	Glycoside hydrolase, family 5, conserved site	Conserved Site
A, C [auth B], E [auth C], G [auth D]	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D]	IPR001919	Carbohydrate-binding type-2 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.