3N2N

The Crystal Structure of Tumor Endothelial Marker 8 (TEM8) extracellular domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth F]	d3n2nf1	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A [auth F]	d3n2nf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth A]	d3n2na1	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth A]	d3n2na2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth B]	d3n2nb1	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth B]	d3n2nb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth C]	d3n2nc1	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth C]	d3n2nc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth D]	d3n2nd1	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth D]	d3n2nd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F [auth E]	d3n2ne1	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F [auth E]	d3n2ne2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth F]	SCOP2B Superfamily	vWA-like	8082334	3000832	SCOP2B (2022-06-29)
B [auth A]	SCOP2 Family	Integrin A (or I) domain	8082333	4000639	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	vWA-like	8082334	3000832	SCOP2 (2022-06-29)
C [auth B]	SCOP2B Superfamily	vWA-like	8082334	3000832	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	vWA-like	8082334	3000832	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	vWA-like	8082334	3000832	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	vWA-like	8082334	3000832	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth F]	PF00092	e3n2nF1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: vWA-like	F: PF00092	ECOD (1.6)
B [auth A]	PF00092	e3n2nA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: vWA-like	F: PF00092	ECOD (1.6)
C [auth B]	PF00092	e3n2nB1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: vWA-like	F: PF00092	ECOD (1.6)
D [auth C]	PF00092	e3n2nC1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: vWA-like	F: PF00092	ECOD (1.6)
E [auth D]	PF00092	e3n2nD1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: vWA-like	F: PF00092	ECOD (1.6)
F [auth E]	PF00092	e3n2nE1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: vWA-like	F: PF00092	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth F]	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)
B [auth A]	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)
C [auth B]	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)
D [auth C]	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)
E [auth D]	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)
F [auth E]	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E]	PF00092	von Willebrand factor type A domain (VWA)	von Willebrand factor type A domain	-	Domain
A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E]	PF05587	Anthrax receptor extracellular domain (Anth_Ig)	Anthrax receptor extracellular domain	This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to Pfam:PF01833 (personal obs: C Yeats).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E]	Anthrax toxin receptor 1	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding collagen binding cation binding ion binding metal ion binding small molecule binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity	reproductive process negative regulation of extracellular matrix organization regulation of biological process regulation of cellular component organization regulation of cellular process negative regulation of cellular component organization biological regulation negative regulation of biological process extracellular matrix organization regulation of cellular component biogenesis cellular component organization cellular component biogenesis cellular component assembly regulation of extracellular matrix assembly reproductive process negative regulation of extracellular matrix organization regulation of biological process regulation of cellular component organization regulation of cellular process negative regulation of cellular component organization biological regulation negative regulation of biological process extracellular matrix organization regulation of cellular component biogenesis cellular component organization cellular component biogenesis cellular component assembly regulation of extracellular matrix assembly negative regulation of extracellular matrix assembly negative regulation of cellular process cellular process cellular component organization or biogenesis regulation of extracellular matrix organization extracellular matrix assembly extracellular structure organization external encapsulating structure organization cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion developmental process multicellular organism development multicellular organismal process anatomical structure development vasculature development blood vessel development system development circulatory system development organelle organization actin cytoskeleton organization actin filament-based process cytoskeleton organization	cell periphery cell surface membrane plasma membrane cellular anatomical entity external side of plasma membrane side of membrane endosome membrane membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system cell periphery cell surface membrane plasma membrane cellular anatomical entity external side of plasma membrane side of membrane endosome membrane membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane filopodium membrane plasma membrane bounded cell projection cell projection actin-based cell projection filopodium plasma membrane region cell projection membrane cell leading edge leading edge membrane lamellipodium membrane lamellipodium

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E]	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E]	IPR008400	Anthrax toxin receptor, extracellular domain	Domain
A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E]	IPR008399	Anthrax toxin receptor, C-terminal	Domain
A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E]	IPR002035	von Willebrand factor, type A	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E]	Pharos: Q9H6X2	capillary infantile hemangioma gapo syndrome Growth retardation, Alopecia, Pseudoanodontia and Optic atrophy large cell medulloblastoma lung carcinoma malignant mesothelioma myopathy adrenal cortex carcinoma osteosarcoma astrocytic tumor pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor Emery-Dreifuss muscular dystrophy glioblastoma hyaline fibromatosis syndrome capillary infantile hemangioma gapo syndrome Growth retardation, Alopecia, Pseudoanodontia and Optic atrophy large cell medulloblastoma lung carcinoma malignant mesothelioma myopathy adrenal cortex carcinoma osteosarcoma astrocytic tumor pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor Emery-Dreifuss muscular dystrophy glioblastoma hyaline fibromatosis syndrome invasive ductal breast carcinoma limb-girdle muscular dystrophy malignant ependymoma malignant pancreatic neoplasm non-small cell lung carcinoma amyotrophic lateral sclerosis ovarian cancer breast cancer Pick disease ulcerative colitis cerebrovascular disorder hypotrichosis juvenile dermatomyositis lung cancer malignant glioma medulloblastoma oligodendroglioma anthrax infection pancreatic ductal adenocarcinoma breast carcinoma pilocytic astrocytoma Duchenne muscular dystrophy gastric carcinoma hereditary spastic paraplegia intellectual disability

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.