3LNZ
Crystal structure of human MDM2 with a 12-mer peptide inhibitor PMI (N8A mutant)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | SWIB/MDM2 domain-like | 8037458 | 3000287 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | SWIB/MDM2 domain-like | 8037458 | 3000287 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | SWIB/MDM2 domain-like | 8037458 | 3000287 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | SWIB/MDM2 domain-like | 8037458 | 3000287 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | SWIB/MDM2 domain-like | 8037458 | 3000287 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | SWIB/MDM2 domain-like | 8037458 | 3000287 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | SWIB/MDM2 domain-like | 8037458 | 3000287 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | SWIB/MDM2 domain-like | 8037458 | 3000287 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02201 | e3lnzA1 | A: alpha arrays | X: SWIB/MDM2 domain (From Topology) | H: SWIB/MDM2 domain (From Topology) | T: SWIB/MDM2 domain | F: PF02201 | ECOD (1.6) |
C | PF02201 | e3lnzC1 | A: alpha arrays | X: SWIB/MDM2 domain (From Topology) | H: SWIB/MDM2 domain (From Topology) | T: SWIB/MDM2 domain | F: PF02201 | ECOD (1.6) |
E | PF02201 | e3lnzE1 | A: alpha arrays | X: SWIB/MDM2 domain (From Topology) | H: SWIB/MDM2 domain (From Topology) | T: SWIB/MDM2 domain | F: PF02201 | ECOD (1.6) |
G | PF02201 | e3lnzG1 | A: alpha arrays | X: SWIB/MDM2 domain (From Topology) | H: SWIB/MDM2 domain (From Topology) | T: SWIB/MDM2 domain | F: PF02201 | ECOD (1.6) |
I | PF02201 | e3lnzI1 | A: alpha arrays | X: SWIB/MDM2 domain (From Topology) | H: SWIB/MDM2 domain (From Topology) | T: SWIB/MDM2 domain | F: PF02201 | ECOD (1.6) |
K | PF02201 | e3lnzK1 | A: alpha arrays | X: SWIB/MDM2 domain (From Topology) | H: SWIB/MDM2 domain (From Topology) | T: SWIB/MDM2 domain | F: PF02201 | ECOD (1.6) |
M | PF02201 | e3lnzM1 | A: alpha arrays | X: SWIB/MDM2 domain (From Topology) | H: SWIB/MDM2 domain (From Topology) | T: SWIB/MDM2 domain | F: PF02201 | ECOD (1.6) |
O | PF02201 | e3lnzO1 | A: alpha arrays | X: SWIB/MDM2 domain (From Topology) | H: SWIB/MDM2 domain (From Topology) | T: SWIB/MDM2 domain | F: PF02201 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.245.10 | Mainly Alpha | Orthogonal Bundle | MDM2 | SWIB/MDM2 domain | CATH (4.3.0) |
C | 1.10.245.10 | Mainly Alpha | Orthogonal Bundle | MDM2 | SWIB/MDM2 domain | CATH (4.3.0) |
E | 1.10.245.10 | Mainly Alpha | Orthogonal Bundle | MDM2 | SWIB/MDM2 domain | CATH (4.3.0) |
G | 1.10.245.10 | Mainly Alpha | Orthogonal Bundle | MDM2 | SWIB/MDM2 domain | CATH (4.3.0) |
I | 1.10.245.10 | Mainly Alpha | Orthogonal Bundle | MDM2 | SWIB/MDM2 domain | CATH (4.3.0) |
K | 1.10.245.10 | Mainly Alpha | Orthogonal Bundle | MDM2 | SWIB/MDM2 domain | CATH (4.3.0) |
M | 1.10.245.10 | Mainly Alpha | Orthogonal Bundle | MDM2 | SWIB/MDM2 domain | CATH (4.3.0) |
O | 1.10.245.10 | Mainly Alpha | Orthogonal Bundle | MDM2 | SWIB/MDM2 domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02201 | SWIB/MDM2 domain (SWIB) | SWIB/MDM2 domain | This family includes the SWIB domain and the MDM2 domain [1]. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. Thi ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003121 | SWIB/MDM2 domain | Domain | |
IPR016495 | p53 negative regulator Mdm2/Mdm4 | Family | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR001876 | Zinc finger, RanBP2-type | Domain | |
IPR036443 | Zinc finger, RanBP2-type superfamily | Homologous Superfamily | |
IPR036885 | SWIB/MDM2 domain superfamily | Homologous Superfamily | |
IPR044080 | MDM2, modified RING finger, HC subclass | Domain | |
IPR001841 | Zinc finger, RING-type | Domain | |
IPR028340 | E3 ubiquitin-protein ligase Mdm2 | Family |