3J9K

Structure of Dark apoptosome in complex with Dronc CARD domain


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth a]PF22164e3j9ka4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
AA [auth a]PF22080e3j9ka3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
AA [auth a]F_UNCLASSIFIEDe3j9ka5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
AA [auth a]PF17908e3j9ka2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
AA [auth a]PF00931e3j9ka1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
CPF22164e3j9kC4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
CPF22080e3j9kC3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
CF_UNCLASSIFIEDe3j9kC6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
CPF17908e3j9kC2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
CPF00931e3j9kC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
CA [auth c]PF22164e3j9kc4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
CA [auth c]PF22080e3j9kc3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
CA [auth c]F_UNCLASSIFIEDe3j9kc5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
CA [auth c]PF17908e3j9kc2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
CA [auth c]PF00931e3j9kc1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
EPF22164e3j9kE4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
EPF22080e3j9kE3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
EF_UNCLASSIFIEDe3j9kE5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
EPF17908e3j9kE2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
EPF00931e3j9kE1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
EA [auth e]PF22164e3j9ke4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
EA [auth e]PF22080e3j9ke3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
EA [auth e]F_UNCLASSIFIEDe3j9ke5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
EA [auth e]PF17908e3j9ke2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
EA [auth e]PF00931e3j9ke1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
GPF22164e3j9kG4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
GPF22080e3j9kG3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
GF_UNCLASSIFIEDe3j9kG5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
GPF17908e3j9kG2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
GPF00931e3j9kG1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
IPF22164e3j9kI4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
IPF22080e3j9kI3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
IF_UNCLASSIFIEDe3j9kI5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
IPF17908e3j9kI2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
IPF00931e3j9kI1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
KPF22164e3j9kK4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
KPF22080e3j9kK3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
KF_UNCLASSIFIEDe3j9kK5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
KPF17908e3j9kK2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
KPF00931e3j9kK1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
MPF22164e3j9kM4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
MPF22080e3j9kM3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
MF_UNCLASSIFIEDe3j9kM5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
MPF17908e3j9kM2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
MPF00931e3j9kM1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
OPF22164e3j9kO4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
OPF22080e3j9kO3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
OF_UNCLASSIFIEDe3j9kO5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
OPF17908e3j9kO2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
OPF00931e3j9kO1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
QPF22164e3j9kQ4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
QPF22080e3j9kQ3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
QF_UNCLASSIFIEDe3j9kQ5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
QPF17908e3j9kQ2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
QPF00931e3j9kQ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
SPF22164e3j9kS4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
SPF22080e3j9kS3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
SF_UNCLASSIFIEDe3j9kS5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
SPF17908e3j9kS2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
SPF00931e3j9kS1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
UPF22164e3j9kU4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
UPF22080e3j9kU3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
UF_UNCLASSIFIEDe3j9kU5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
UPF17908e3j9kU2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
UPF00931e3j9kU1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
WPF22164e3j9kW4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
WPF22080e3j9kW3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
WF_UNCLASSIFIEDe3j9kW5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
WPF17908e3j9kW2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
WPF00931e3j9kW1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
YPF22164e3j9kY4 A: alpha arraysX: HTHH: HTHT: wingedF: PF22164ECOD (1.6)
YPF22080e3j9kY3 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF22080ECOD (1.6)
YF_UNCLASSIFIEDe3j9kY5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
YPF17908e3j9kY2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: PF17908ECOD (1.6)
YPF00931e3j9kY1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00931ECOD (1.6)
BF_UNCLASSIFIEDe3j9kB1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
BA [auth b]F_UNCLASSIFIEDe3j9kb1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe3j9kD1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
DA [auth d]F_UNCLASSIFIEDe3j9kd1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe3j9kF1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
FA [auth f]F_UNCLASSIFIEDe3j9kf1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe3j9kH1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe3j9kJ1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
LF_UNCLASSIFIEDe3j9kL1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
NF_UNCLASSIFIEDe3j9kN1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
PF_UNCLASSIFIEDe3j9kP1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
RF_UNCLASSIFIEDe3j9kR1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
TF_UNCLASSIFIEDe3j9kT1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
VF_UNCLASSIFIEDe3j9kV1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
XF_UNCLASSIFIEDe3j9kX1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)
ZF_UNCLASSIFIEDe3j9kZ1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00931NB-ARC domain (NB-ARC)NB-ARC domain- Domain
PF17908APAF-1 helical domain (APAF1_C)APAF-1 helical domainThis domain represents the C-terminal alpha helical domain of the apoptotic Apaf-1 protein.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Apaf-1 related killer DARK
Caspase Nc

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR041452APAF-1 helical domainDomain
IPR002182NB-ARCDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR001309Peptidase C14, p20 domainDomain
IPR011600Peptidase C14, caspase domainDomain
IPR015917Peptidase C14A, caspase catalytic domainDomain
IPR011029Death-like domain superfamilyHomologous Superfamily
IPR029030Caspase-like domain superfamilyHomologous Superfamily
IPR033139Peptidase family C14A, cysteine active siteActive Site
IPR002138Peptidase C14, caspase non-catalytic subunit p10Domain