3J92

Structure and assembly pathway of the ribosome quality control complex

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GPF01248e3j92G1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
FA [auth g]PF01199e3j92g1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
APF00181e3j92A1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
APF03947e3j92A2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
JPF00281,PF00673e3j92J1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
K [auth L]PF01294e3j92L1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
L [auth M]PF00467,PF01929e3j92M1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
M [auth N]PF00827e3j92N1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
N [auth O]PF00572e3j92O1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
O [auth P]PF00237e3j92P1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
P [auth Q]PF17135e3j92Q1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
Q [auth R]PF01280e3j92R1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
Q [auth R]PF01280e3j92R2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
R [auth S]F_UNCLASSIFIEDe3j92S1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
R [auth S]PF01775e3j92S2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
S [auth T]PF01157e3j92T1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
BPF00297e3j92B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
T [auth U]PF01776e3j92U1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
U [auth V]PF00238e3j92V1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
V [auth W]PF01246e3j92W1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
W [auth X]PF00276,PF03939e3j92X1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
X [auth Y]PF16906e3j92Y1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
Y [auth Z]PF00467,PF01777e3j92Z1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
Z [auth a]PF00828e3j92a1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
AA [auth b]PF01779e3j92b1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
BA [auth c]PF01248e3j92c1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
CA [auth d]PF01198e3j92d1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
CPF00573e3j92C2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
CPF14374e3j92C1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
DA [auth e]PF01655e3j92e1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
EA [auth f]PF01247e3j92f1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
GA [auth h]PF00831e3j92h1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
HA [auth i]PF01158e3j92i1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
IA [auth j]PF01907e3j92j1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
JA [auth k]PF01781e3j92k1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
KA [auth l]PF00832e3j92l1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
LA [auth m]PF01020e3j92m1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
MA [auth o]PF00935e3j92o1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
DPF14204,PF17144e3j92D1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
NA [auth p]PF01780e3j92p1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
OA [auth r]PF01778e3j92r1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
PA [auth s]PF00466e3j92s2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
PA [auth s]PF17777e3j92s1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
QA [auth t]PF00298e3j92t1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
QA [auth t]PF03946e3j92t2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
RA [auth u]PF05833e3j92u1 A: beta barrelsX: MutM N-terminal domain-likeH: Fibrinogen binding protein N-terminal domain (From Topology)T: Fibrinogen binding protein N-terminal domainF: PF05833ECOD (1.6)
EPF01159,PF03868e3j92E1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
FPF00327,PF08079e3j92F1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
HPF00347e3j92H2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
IPF00252e3j92I1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
RA [auth u],
SA [auth v]		PF05833NFACT N-terminal and middle domains (NFACT_N)NFACT N-terminal and middle domains- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
eL8---
FA [auth g]eL34---
uL2---
uL5---
K [auth L]eL13---
L [auth M]eL14---
M [auth N]eL15---
N [auth O]uL13---
O [auth P]uL22---
P [auth Q]eL18---
Q [auth R]eL19---
R [auth S]eL20---
S [auth T]eL21---
uL3---
T [auth U]eL22---
U [auth V]uL14---
V [auth W]eL24---
W [auth X]uL23---
X [auth Y]uL24---
Y [auth Z]eL27---
Z [auth a]uL15---
AA [auth b]eL29---
BA [auth c]eL30---
CA [auth d]eL31---
uL4---
DA [auth e]eL32---
EA [auth f]eL33---
GA [auth h]uL29---
HA [auth i]eL36---
IA [auth j]eL37---
JA [auth k]eL38---
KA [auth l]eL39---
LA [auth m]eL40---
MA [auth o]eL42---
uL18---
NA [auth p]eL43---
OA [auth r]eL28---
PA [auth s]uL10---
QA [auth t]uL11---
RA [auth u],
SA [auth v]		NEMF
TA [auth w],
WA [auth z],
XA [auth 0]		Listerin
UA [auth x],
VA [auth y]		Listerin---
YA [auth 1]nascent chain---
ZA [auth 2]tRNA---
AB [auth 5]28S rRNA---
eL6---
BB [auth 7]5S rRNA---
CB [auth 8]5.8S rRNA---
eL30---
uL6---
uL16---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
RA [auth u],
SA [auth v]		IPR008532NFACT, RNA-binding domainDomain
RA [auth u],
SA [auth v]		IPR021846NFACT protein, C-terminalDomain
TA [auth w],
WA [auth z],
XA [auth 0]		IPR016024Armadillo-type foldHomologous Superfamily
TA [auth w],
WA [auth z],
XA [auth 0]		IPR039795E3 ubiquitin-protein ligase listerinFamily
TA [auth w],
WA [auth z],
XA [auth 0]		IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
TA [auth w],
WA [auth z],
XA [auth 0]		IPR011016Zinc finger, RING-CH-typeDomain
TA [auth w],
WA [auth z],
XA [auth 0]		IPR011989Armadillo-like helicalHomologous Superfamily
TA [auth w],
WA [auth z],
XA [auth 0]		IPR039804Listerin, zinc finger, RING-typeDomain
TA [auth w],
WA [auth z],
XA [auth 0]		IPR001841Zinc finger, RING-typeDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
RA [auth u],
SA [auth v]		Pharos:  O60524
TA [auth w],
WA [auth z],
XA [auth 0]		Pharos:  O94822