Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ed3erne1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like IpsF-like IpsF-like 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Ed3erne2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Fd3ernf1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like IpsF-like IpsF-like 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Fd3ernf2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Ad3erna1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like IpsF-like IpsF-like 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Ad3erna2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Bd3ernb1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like IpsF-like IpsF-like 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Bd3ernb2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Cd3ernc1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like IpsF-like IpsF-like 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Cd3ernc2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Dd3ernd1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like IpsF-like IpsF-like 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Dd3ernd2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2B SuperfamilyIpsF-like8039227 3000926 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyIpsF-like8039227 3000926 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyIpsF-like8039227 3000926 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyIpsF-like8039227 3000926 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyIpsF-like8039227 3000926 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyIpsF-like8039227 3000926 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EYgbBe3ernE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology)T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspFF: YgbBECOD (1.6)
FYgbBe3ernF1 A: a+b three layersX: Bacillus chorismate mutase-likeH: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology)T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspFF: YgbBECOD (1.6)
AYgbBe3ernA1 A: a+b three layersX: Bacillus chorismate mutase-likeH: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology)T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspFF: YgbBECOD (1.6)
BYgbBe3ernB1 A: a+b three layersX: Bacillus chorismate mutase-likeH: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology)T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspFF: YgbBECOD (1.6)
CYgbBe3ernC1 A: a+b three layersX: Bacillus chorismate mutase-likeH: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology)T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspFF: YgbBECOD (1.6)
DYgbBe3ernD1 A: a+b three layersX: Bacillus chorismate mutase-likeH: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology)T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspFF: YgbBECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
F3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
A3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
B3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
C3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
D3.30.1330.50 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02542YgbB family (YgbB)YgbB family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -