3DUG

Crystal structure of zn-dependent arginine carboxypeptidase complexed with zinc

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3duga1	All beta proteins	Composite domain of metallo-dependent hydrolases	Composite domain of metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
A	d3duga2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
B	d3dugb1	All beta proteins	Composite domain of metallo-dependent hydrolases	Composite domain of metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
B	d3dugb2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
D	d3dugd1	All beta proteins	Composite domain of metallo-dependent hydrolases	Composite domain of metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
D	d3dugd2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
E	d3duge1	All beta proteins	Composite domain of metallo-dependent hydrolases	Composite domain of metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
E	d3duge2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
F	d3dugf1	All beta proteins	Composite domain of metallo-dependent hydrolases	Composite domain of metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
F	d3dugf2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
G	d3dugg1	All beta proteins	Composite domain of metallo-dependent hydrolases	Composite domain of metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
G	d3dugg2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
H	d3dugh1	All beta proteins	Composite domain of metallo-dependent hydrolases	Composite domain of metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
H	d3dugh2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
C	d3dugc1	All beta proteins	Composite domain of metallo-dependent hydrolases	Composite domain of metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)
C	d3dugc2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Zn-dependent arginine carboxypeptidase-like	Zn-dependent arginine carboxypeptidase	(unidentified ) [TaxId: 32644 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Isoaspartyl-dipeptidase	e3dugA1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
A	Amidohydro_1_N	e3dugA2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
B	Isoaspartyl-dipeptidase	e3dugB1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
B	Amidohydro_1_N	e3dugB2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
D	Isoaspartyl-dipeptidase	e3dugD1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
D	Amidohydro_1_N	e3dugD2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
E	Isoaspartyl-dipeptidase	e3dugE1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
E	Amidohydro_1_N	e3dugE2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
F	Isoaspartyl-dipeptidase	e3dugF1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
F	Amidohydro_1_N	e3dugF2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
G	Isoaspartyl-dipeptidase	e3dugG1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
G	Amidohydro_1_N	e3dugG2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
H	Isoaspartyl-dipeptidase	e3dugH1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
H	Amidohydro_1_N	e3dugH2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
C	Isoaspartyl-dipeptidase	e3dugC1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
C	Amidohydro_1_N	e3dugC2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
A	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
B	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
B	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
D	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
D	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
E	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
E	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
F	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
F	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
G	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
G	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
H	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
H	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
C	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
C	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.