3D37
The crystal structure of the tail protein from Neisseria meningitidis MC58
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3d37a2 | All beta proteins | Phage tail proteins | Phage tail proteins | Baseplate protein-like | Baseplate protein gpP, C-terminal domain | (Neisseria meningitidis MC58 ) [TaxId: 122586 ], | SCOPe (2.08) |
A | d3d37a1 | All beta proteins | Phage tail proteins | Phage tail proteins | Baseplate protein-like | Baseplate protein gpP, N-terminal domain | (Neisseria meningitidis MC58 ) [TaxId: 122586 ], | SCOPe (2.08) |
B | d3d37b2 | All beta proteins | Phage tail proteins | Phage tail proteins | Baseplate protein-like | Baseplate protein gpP, C-terminal domain | (Neisseria meningitidis MC58 ) [TaxId: 122586 ], | SCOPe (2.08) |
B | d3d37b1 | All beta proteins | Phage tail proteins | Phage tail proteins | Baseplate protein-like | Baseplate protein gpP, N-terminal domain | (Neisseria meningitidis MC58 ) [TaxId: 122586 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Baseplate protein-like | 8028056 | 4003106 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Baseplate protein-like | 8028057 | 4003106 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Phage tail proteins | 8040435 | 3000268 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Phage tail proteins | 8040436 | 3000268 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Phage tail proteins | 8040436 | 3000268 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Phage tail proteins | 8040435 | 3000268 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF21683 | e3d37A5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Phage tail proteins | F: PF21683 | ECOD (1.6) |
A | PF22174 | e3d37A2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Phage tail proteins | F: PF22174 | ECOD (1.6) |
A | PF22255 | e3d37A6 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: N0 domain in phage tail proteins and secretins (From Topology) | T: N0 domain in phage tail proteins and secretins | F: PF22255 | ECOD (1.6) |
A | PF22630 | e3d37A1 | A: a+b complex topology | X: C-terminal insertion domain in phage tail proteins (From Topology) | H: C-terminal insertion domain in phage tail proteins (From Topology) | T: C-terminal insertion domain in phage tail proteins | F: PF22630 | ECOD (1.6) |
B | PF21683 | e3d37B3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Phage tail proteins | F: PF21683 | ECOD (1.6) |
B | PF22174 | e3d37B2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Phage tail proteins | F: PF22174 | ECOD (1.6) |
B | PF22255 | e3d37B4 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: N0 domain in phage tail proteins and secretins (From Topology) | T: N0 domain in phage tail proteins and secretins | F: PF22255 | ECOD (1.6) |
B | PF22630 | e3d37B1 | A: a+b complex topology | X: C-terminal insertion domain in phage tail proteins (From Topology) | H: C-terminal insertion domain in phage tail proteins (From Topology) | T: C-terminal insertion domain in phage tail proteins | F: PF22630 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.300.10 | Mainly Beta | Roll | Phage tail proteins - horseshoe like beta roll fold | Baseplate protein-like domain - beta roll fold | CATH (4.3.0) |
A | 3.55.50.10 | Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | Baseplate protein-like domains | CATH (4.3.0) |
A | 3.30.1920.10 | Alpha Beta | 2-Layer Sandwich | Phage tail proteins - 2 layer sandwich fold | Baseplate protein-like domains - 2 layer sandwich fold | CATH (4.3.0) |
B | 2.30.300.10 | Mainly Beta | Roll | Phage tail proteins - horseshoe like beta roll fold | Baseplate protein-like domain - beta roll fold | CATH (4.3.0) |
B | 3.55.50.10 | Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | Baseplate protein-like domains | CATH (4.3.0) |
B | 3.30.1920.10 | Alpha Beta | 2-Layer Sandwich | Phage tail proteins - 2 layer sandwich fold | Baseplate protein-like domains - 2 layer sandwich fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21683 | Mu phage baseplate assembly protein GpP-like, N-terminal (GpP-like_1st) | Mu phage baseplate assembly protein GpP-like, N-terminal | This domain is found at the N-terminal end of Mu phage baseplate assembly protein GpP from Shewanella oneidensis and similar proteins predominantly found in tailed bacteriophages and bacterial prophages. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR049354 | Baseplate hub protein gp44-like, N-terminal | Domain | |
IPR023399 | Baseplate-like, two-layer sandwich fold | Homologous Superfamily | |
IPR026276 | Baseplate protein GpP | Family |