3BU2
Crystal structure of a tRNA-binding protein from Staphylococcus saprophyticus subsp. saprophyticus. Northeast Structural Genomics Consortium target SyR77
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01588 | e3bu2A2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01588 | ECOD (1.6) |
A | PF14794 | e3bu2A1 | A: a+b two layers | X: DUF4479 (From Topology) | H: DUF4479 (From Topology) | T: DUF4479 | F: PF14794 | ECOD (1.6) |
B | PF01588 | e3bu2B2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01588 | ECOD (1.6) |
B | PF14794 | e3bu2B1 | A: a+b two layers | X: DUF4479 (From Topology) | H: DUF4479 (From Topology) | T: DUF4479 | F: PF14794 | ECOD (1.6) |
C | PF01588 | e3bu2C2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01588 | ECOD (1.6) |
C | PF14794 | e3bu2C1 | A: a+b two layers | X: DUF4479 (From Topology) | H: DUF4479 (From Topology) | T: DUF4479 | F: PF14794 | ECOD (1.6) |
D | PF01588 | e3bu2D2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01588 | ECOD (1.6) |
D | PF14794 | e3bu2D1 | A: a+b two layers | X: DUF4479 (From Topology) | H: DUF4479 (From Topology) | T: DUF4479 | F: PF14794 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
A | 3.30.1940.10 | Alpha Beta | 2-Layer Sandwich | Nucleic acid-binding protein fold | YtpR-like | CATH (4.3.0) |
B | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
B | 3.30.1940.10 | Alpha Beta | 2-Layer Sandwich | Nucleic acid-binding protein fold | YtpR-like | CATH (4.3.0) |
C | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
C | 3.30.1940.10 | Alpha Beta | 2-Layer Sandwich | Nucleic acid-binding protein fold | YtpR-like | CATH (4.3.0) |
D | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
D | 3.30.1940.10 | Alpha Beta | 2-Layer Sandwich | Nucleic acid-binding protein fold | YtpR-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14794 | Domain of unknown function (DUF4479) (DUF4479) | Domain of unknown function (DUF4479) | - | Family | |
PF01588 | Putative tRNA binding domain (tRNA_bind) | Putative tRNA binding domain | This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [2], human tyrosyl-tRNA synthetase [1], and endothelial-monocyte activating polypept ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Putative tRNA-binding protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033714 | Phenylalanly tRNA synthetase, tRNA-binding-domain | Domain | |
IPR027855 | Domain of unknown function DUF4479 | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR002547 | tRNA-binding domain | Domain | |
IPR037154 | YtpR-like superfamily | Homologous Superfamily |