2W7N

Crystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene Regulation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Sigma factor domain-like	8091436	3000953	SCOP2B (2022-06-29)
B	SCOP2 Family	KorA-like	8045684	4004615	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Sigma factor domain-like	8091436	3000953	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF16509	e2w7nA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF16509	ECOD (1.6)
B	PF16509	e2w7nB1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF16509	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.2690	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
B	1.10.10.2690	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF16509	TrfB plasmid transcriptional repressor (KORA)	TrfB plasmid transcriptional repressor	KORA is a family of Gram-negative bacterial proteins that act as global repressors of genes involved in plasmid replication, conjugative transfer and stable inheritance in the IncP group of plasmids. KORA operates as a symmetric dimer, and contacts t ...	KORA is a family of Gram-negative bacterial proteins that act as global repressors of genes involved in plasmid replication, conjugative transfer and stable inheritance in the IncP group of plasmids. KORA operates as a symmetric dimer, and contacts the DNA via the helix-turn-helix region at the N-terminus [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	TRFB TRANSCRIPTIONAL REPRESSOR PROTEIN	DNA binding binding organic cyclic compound binding nucleic acid binding	-	-
C [auth E], E [auth G]	5'-D(APAPTPGPTPTPTPAPGPCP TPAPAPAPCPAPAPG)-3'	-	-	-
D [auth F], F [auth H]	5'-D(CPBRUPBRUPGPTPTPTPAPGPCPTPAP APAPCPAPBRUPT)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR032428	TrfB transcriptional repressor protein	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.