2QSF
Crystal structure of the Rad4-Rad23 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | beta-hairpin DNA-binding domain-like | 8052784 | 3002139 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | beta-hairpin DNA-binding domain-like | 8052785 | 3002139 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Cysteine proteinases | 8052789 | 3001808 | SCOP2B (2022-06-29) |
B [auth X] | SCOP2B Superfamily | XPC-binding domain | 8033589 | 3000974 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF10405 | e2qsfA6 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: PF10405 | ECOD (1.6) |
A | F_UNCLASSIFIED | e2qsfA5 | A: alpha arrays | X: DNA repair protein RAD4 beta-hairpin domain (From Topology) | H: DNA repair protein RAD4 beta-hairpin domain (From Topology) | T: DNA repair protein RAD4 beta-hairpin domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF10403 | e2qsfA3 | A: alpha arrays | X: DNA repair protein RAD4 beta-hairpin domain (From Topology) | H: DNA repair protein RAD4 beta-hairpin domain (From Topology) | T: DNA repair protein RAD4 beta-hairpin domain | F: PF10403 | ECOD (1.6) |
A | PF03835 | e2qsfA1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF03835 | ECOD (1.6) |
B [auth X] | PF09280 | e2qsfX1 | A: alpha arrays | X: HTH | H: XPC-binding domain (From Topology) | T: XPC-binding domain | F: PF09280 | ECOD (1.6) |
B [auth X] | PF00627 | e2qsfX2 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: PF00627 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.260.10 | Alpha Beta | Alpha-Beta Complex | Coagulation Factor XIII | Chain A, domain 2 | CATH (4.3.0) |
A | 2.20.20.110 | Mainly Beta | Single Sheet | Anthopleurin-A | Rad4, beta-hairpin domain BHD1 | CATH (4.3.0) |
A | 3.30.60.290 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
A | 3.30.70.2460 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Rad4, beta-hairpin domain BHD3 | CATH (4.3.0) |
B [auth X] | 1.10.10.540 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | XPC-binding domain | CATH (4.3.0) |
B [auth X] | 1.10.8.10 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03835 | Rad4 transglutaminase-like domain (Rad4) | Rad4 transglutaminase-like domain | - | Domain | |
PF10405 | Rad4 beta-hairpin domain 3 (BHD_3) | Rad4 beta-hairpin domain 3 | This short domain is found in the Rad4 protein. This domain binds to DNA [1]. | Domain | |
PF10403 | Rad4 beta-hairpin domain 1 (BHD_1) | Rad4 beta-hairpin domain 1 | This short domain is found in the Rad4 protein. This domain binds to DNA [1]. | Domain | |
B [auth X] | PF00627 | UBA/TS-N domain (UBA) | UBA/TS-N domain | This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin a ... | Domain |
B [auth X] | PF09280 | XPC-binding domain (XPC-binding) | XPC-binding domain | Members of this family adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018326 | Rad4 beta-hairpin domain 1 | Domain | |
IPR042488 | Rad4, beta-hairpin domain 3 superfamily | Homologous Superfamily | |
IPR036985 | Transglutaminase-like superfamily | Homologous Superfamily | |
IPR018325 | Rad4/PNGase transglutaminase-like fold | Domain | |
IPR004583 | DNA repair protein Rad4 | Family | |
IPR018328 | Rad4 beta-hairpin domain 3 | Domain | |
IPR018026 | DNA repair protein Rad4-like | Family | |
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR018327 | Rad4 beta-hairpin domain 2 | Domain | |
B [auth X] | IPR004806 | UV excision repair protein Rad23 | Family |
B [auth X] | IPR036353 | XPC-binding domain superfamily | Homologous Superfamily |
B [auth X] | IPR015360 | XPC-binding domain | Domain |
B [auth X] | IPR015940 | Ubiquitin-associated domain | Domain |
B [auth X] | IPR000626 | Ubiquitin-like domain | Domain |
B [auth X] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
B [auth X] | IPR009060 | UBA-like superfamily | Homologous Superfamily |
B [auth X] | IPR006636 | Heat shock chaperonin-binding | Domain |