2MKK
Structural model of tandem RRM domains of cytoplasmic polyadenylation element binding protein 1 (CPEB1) in complex with RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Canonical RBD | 8045473 | 4000236 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Canonical RBD | 8045475 | 4000236 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RNA-binding domain RBD | 8090295 | 3000110 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RNA-binding domain RBD | 8090296 | 3000110 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00076 | e2mkkA2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
A | PF16367 | e2mkkA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF16367 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16367 | RNA recognition motif (RRM_7) | RNA recognition motif | - | Domain | |
PF16366 | Cytoplasmic polyadenylation element-binding protein ZZ domain (CEBP_ZZ) | Cytoplasmic polyadenylation element-binding protein ZZ domain | This ZZ-type zinc finger domain binds zinc via two conserved histidines in the C-terminal part of the domain [1]. | Domain | |
PF16368 | Cytoplasmic polyadenylation element-binding protein 1 N-terminus (CEBP1_N) | Cytoplasmic polyadenylation element-binding protein 1 N-terminus | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032292 | Cytoplasmic polyadenylation element-binding protein 1, N-terminal | Domain | |
IPR038446 | CEBP, ZZ domain superfamily | Homologous Superfamily | |
IPR000504 | RNA recognition motif domain | Domain | |
IPR034977 | CPEB-1, RNA recognition motif 1 | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR032296 | Cytoplasmic polyadenylation element-binding protein, ZZ domain | Domain | |
IPR034819 | Cytoplasmic polyadenylation element-binding protein | Family | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |