2K4T

Solution structure of human VDAC-1 in LDAO micelles

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01459	e2k4tA1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: PF01459	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01459	Eukaryotic porin (Porin_3)	Eukaryotic porin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Voltage-dependent anion-selective channel protein 1	sterol binding binding organic cyclic compound binding alcohol binding steroid binding lipid binding cholesterol binding small molecule binding amide binding ceramide binding sphingolipid binding wide pore channel activity passive transmembrane transporter activity channel activity sterol binding binding organic cyclic compound binding alcohol binding steroid binding lipid binding cholesterol binding small molecule binding amide binding ceramide binding sphingolipid binding wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity protein binding transmembrane transporter binding kinase binding enzyme binding protein kinase binding oxysterol binding cation binding ion binding phosphatidylcholine binding phospholipid binding quaternary ammonium group binding identical protein binding monoatomic anion transmembrane transporter activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic anion channel activity monoatomic anion channel activity monoatomic ion transmembrane transporter activity	catabolic process regulation of cellular process regulation of cellular component organization autophagy regulation of autophagy cellular catabolic process cellular component organization organelle disassembly regulation of autophagy of mitochondrion cellular component organization or biogenesis process utilizing autophagic mechanism mitochondrion organization cellular component disassembly regulation of biological process catabolic process regulation of cellular process regulation of cellular component organization autophagy regulation of autophagy cellular catabolic process cellular component organization organelle disassembly regulation of autophagy of mitochondrion cellular component organization or biogenesis process utilizing autophagic mechanism mitochondrion organization cellular component disassembly regulation of biological process cellular metabolic process biological regulation regulation of cellular metabolic process regulation of catabolic process regulation of organelle organization organelle organization regulation of cellular catabolic process regulation of mitochondrion organization metabolic process cellular process regulation of metabolic process autophagy of mitochondrion trans-synaptic signaling signaling neuron-neuron synaptic transmission cell-cell signaling chemical synaptic transmission cell communication synaptic signaling anterograde trans-synaptic signaling behavior multicellular organismal process system process learning learning or memory nervous system process cognition regulation of calcium ion transport regulation of localization transport monoatomic ion transmembrane transport negative regulation of monoatomic ion transport negative regulation of biological process negative regulation of transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport negative regulation of transmembrane transport monoatomic cation transmembrane transport regulation of calcium ion transmembrane transport localization negative regulation of monoatomic ion transmembrane transport regulation of calcium import into the mitochondrion negative regulation of cellular process monoatomic ion transport negative regulation of cation transmembrane transport calcium import into the mitochondrion monoatomic cation transport regulation of metal ion transport mitochondrial transport negative regulation of calcium import into the mitochondrion regulation of transport regulation of monoatomic ion transport inorganic ion transmembrane transport mitochondrial transmembrane transport establishment of localization inorganic cation transmembrane transport negative regulation of calcium ion transport transmembrane transport import into the mitochondrion regulation of transmembrane transport mitochondrial calcium ion transmembrane transport regulation of monoatomic cation transmembrane transport negative regulation of calcium ion transmembrane transport calcium ion transmembrane transport negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death pyruvate metabolic process organic substance metabolic process oxoacid metabolic process carboxylic acid metabolic process small molecule metabolic process monocarboxylic acid metabolic process organic acid metabolic process developmental process epithelium development cellular developmental process cell differentiation anatomical structure development tissue development epithelial cell differentiation monoatomic anion transport cellular response to stimulus positive regulation of organelle organization positive regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization response to stimulus macroautophagy regulation of cellular response to stress positive regulation of autophagy of mitochondrion positive regulation of metabolic process mitophagy regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization positive regulation of autophagy positive regulation of mitophagy regulation of mitophagy regulation of autophagy of mitochondrion in response to mitochondrial depolarization regulation of macroautophagy regulation of response to stimulus positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization positive regulation of cellular component organization positive regulation of biological process positive regulation of cellular metabolic process positive regulation of response to stimulus cellular response to stress regulation of response to stress response to stress positive regulation of macroautophagy positive regulation of cellular process positive regulation of catabolic process positive regulation of mitophagy in response to mitochondrial depolarization response to mitochondrial depolarisation positive regulation of cellular catabolic process parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization negative regulation of metabolic process reactive oxygen species metabolic process negative regulation of cellular metabolic process negative regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process behavioral defense response fear response behavioral fear response defense response multicellular organismal response to stress	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle mitochondrial membrane organelle envelope mitochondrial envelope organelle membrane cell periphery plasma membrane membrane microdomain membrane raft synapse cell junction organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane membrane-enclosed lumen nucleoid mitochondrial matrix intracellular organelle lumen organelle lumen intracellular non-membrane-bounded organelle mitochondrial nucleoid non-membrane-bounded organelle mitochondrial permeability transition pore complex mitochondrial protein-containing complex protein-containing complex membrane protein complex pore complex nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR023614	Porin domain superfamily	Homologous Superfamily
A	IPR001925	Porin, eukaryotic type	Family
A	IPR027246	Eukaryotic porin/Tom40	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P21796	Psychomotor Disorders inborn mitochondrial myopathy myocardial infarction epilepsy ovarian cancer systemic lupus erythematosus allergic rhinitis diabetic kidney disease plasma cell myeloma astrocytic tumor breast cancer Hashimoto thyroiditis osteosarcoma rheumatoid arthritis hypothyroidism Psychomotor Disorders inborn mitochondrial myopathy myocardial infarction epilepsy ovarian cancer systemic lupus erythematosus allergic rhinitis diabetic kidney disease plasma cell myeloma astrocytic tumor breast cancer Hashimoto thyroiditis osteosarcoma rheumatoid arthritis hypothyroidism lung adenocarcinoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Beta-barrel transmembrane	Mitochondrial and plastid porins	Voltage-dependent anion channel (VDAC) porin (n=19,S=20)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.