Annotations: 2J8A

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF21569	e2j8aA1	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF21569	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RRM (RNA recognition motif) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21569	Histone-lysine N-methyltransferase, RNA-binding domain (SET1_RBD)	Histone-lysine N-methyltransferase, RNA-binding domain	This domain is found in Histone-lysine N-methyltransferase, H3 lysine -4 specific from Saccharomyces cerevisiae (SET1) and similar proteins predominantly from yeast. SET1 is the methyltransferase subunit of the COMPASS (Set1C) complex that plays a ro ...	This domain is found in Histone-lysine N-methyltransferase, H3 lysine -4 specific from Saccharomyces cerevisiae (SET1) and similar proteins predominantly from yeast. SET1 is the methyltransferase subunit of the COMPASS (Set1C) complex that plays a role in telomere length maintenance and transcription elongation regulation [1]. This entry represents the RNA-binding domain (RBD), which shows an alpha-beta structure.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-4 SPECIFIC	protein-lysine N-methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups lysine N-methyltransferase activity protein methyltransferase activity N-methyltransferase activity transferase activity methyltransferase activity catalytic activity S-adenosylmethionine-dependent methyltransferase activity RNA binding binding organic cyclic compound binding nucleic acid binding protein-lysine N-methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups lysine N-methyltransferase activity protein methyltransferase activity N-methyltransferase activity transferase activity methyltransferase activity catalytic activity S-adenosylmethionine-dependent methyltransferase activity RNA binding binding organic cyclic compound binding nucleic acid binding histone H3 methyltransferase activity histone methyltransferase activity histone H3K4 methyltransferase activity histone modifying activity histone H3K4 trimethyltransferase activity	positive regulation of organelle organization meiotic chromosome segregation regulation of cellular process regulation of reproductive process cellular component biogenesis cellular component assembly cell cycle synaptonemal complex organization chromosome segregation regulation of biological process positive regulation of synaptonemal complex assembly regulation of cell cycle process meiotic cell cycle regulation of chromosome organization positive regulation of organelle organization meiotic chromosome segregation regulation of cellular process regulation of reproductive process cellular component biogenesis cellular component assembly cell cycle synaptonemal complex organization chromosome segregation regulation of biological process positive regulation of synaptonemal complex assembly regulation of cell cycle process meiotic cell cycle regulation of chromosome organization regulation of organelle organization positive regulation of chromosome organization chromosome organization involved in meiotic cell cycle meiosis I cell cycle process homologous chromosome pairing at meiosis homologous chromosome segregation regulation of cellular component organization positive regulation of cellular component organization sexual reproduction reproductive process positive regulation of biological process synaptonemal complex assembly meiotic cell cycle process regulation of synaptonemal complex assembly cellular component organization meiosis I positive regulation of cell cycle process meiotic nuclear division cellular component organization or biogenesis regulation of cell cycle positive regulation of cellular process cell cycle process positive regulation of reproductive process positive regulation of cellular component biogenesis organelle fission biological regulation chromosome organization regulation of cellular component biogenesis positive regulation of cell cycle organelle organization nuclear division nuclear chromosome segregation cellular process regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of meiotic DNA double-strand break formation organic substance metabolic process regulation of nucleobase-containing compound metabolic process primary metabolic process regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process organic cyclic compound metabolic process meiotic DNA double-strand break formation metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process protein-DNA complex organization chromatin organization organic substance biosynthetic process negative regulation of cellular process chromatin remodeling negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation protein-containing complex organization epigenetic regulation of gene expression cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process silent mating-type cassette heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process regulation of chromatin organization telomere organization telomere maintenance subtelomeric heterochromatin formation organonitrogen compound metabolic process protein methylation macromolecule methylation protein alkylation methylation macromolecule modification protein metabolic process protein modification process developmental process sexual sporulation resulting in formation of a cellular spore cellular developmental process reproductive process in single-celled organism cell development developmental process involved in reproduction sporulation resulting in formation of a cellular spore anatomical structure morphogenesis ascospore formation sexual sporulation cell differentiation anatomical structure formation involved in morphogenesis anatomical structure development sporulation RNA metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription sterol homeostasis chemical homeostasis homeostatic process lipid homeostasis negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process nucleolar chromatin organization rDNA heterochromatin formation nucleus organization nucleolus organization facultative heterochromatin formation positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process	membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity transferase complex intracellular organelle lumen intracellular organelle membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity transferase complex intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen intracellular non-membrane-bounded organelle chromosome chromosome, telomeric region chromosomal region non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR024636	Histone lysine methyltransferase SET associated	Domain
A	IPR048669	Histone-lysine N-methyltransferase SET1, RNA-binding domain	Domain
A	IPR046341	SET domain superfamily	Homologous Superfamily
A	IPR001214	SET domain	Domain
A	IPR003616	Post-SET domain	Domain
A	IPR024657	COMPASS complex Set1 subunit, N-SET domain	Domain
A	IPR044570	Histone-lysine N-methyltransferase Set1-like	Family
A	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A	IPR017111	Histone-lysine N-methyltransferase Set1, fungi	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.