2F66
Structure of the ESCRT-I endosomal trafficking complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Endosomal sorting complex assembly domain-like | 8040587 | 3000610 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Endosomal sorting complex assembly domain-like | 8040587 | 3000610 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Endosomal sorting complex assembly domain-like | 8040590 | 3000610 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Endosomal sorting complex assembly domain-like | 8040590 | 3000610 | SCOP2B (2022-06-29) |
C | SCOP2 Family | VPS37 C-terminal domain-like | 8028189 | 4001064 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Endosomal sorting complex assembly domain-like | 8040568 | 3000610 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | Endosomal sorting complex assembly domain-like | 8040568 | 3000610 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF09454 | e2f66A1 | A: alpha bundles | X: Long alpha-hairpin | H: Endosomal sorting complex assembly domains (From Topology) | T: Endosomal sorting complex assembly domains | F: PF09454 | ECOD (1.6) |
D | PF09454 | e2f66D1 | A: alpha bundles | X: Long alpha-hairpin | H: Endosomal sorting complex assembly domains (From Topology) | T: Endosomal sorting complex assembly domains | F: PF09454 | ECOD (1.6) |
B | PF03997 | e2f66B1 | A: alpha bundles | X: Long alpha-hairpin | H: Endosomal sorting complex assembly domains (From Topology) | T: Endosomal sorting complex assembly domains | F: PF03997 | ECOD (1.6) |
E | PF03997 | e2f66E1 | A: alpha bundles | X: Long alpha-hairpin | H: Endosomal sorting complex assembly domains (From Topology) | T: Endosomal sorting complex assembly domains | F: PF03997 | ECOD (1.6) |
C | PF07200 | e2f66C1 | A: alpha bundles | X: Long alpha-hairpin | H: Endosomal sorting complex assembly domains (From Topology) | T: Endosomal sorting complex assembly domains | F: PF07200 | ECOD (1.6) |
F | PF07200 | e2f66F1 | A: alpha bundles | X: Long alpha-hairpin | H: Endosomal sorting complex assembly domains (From Topology) | T: Endosomal sorting complex assembly domains | F: PF07200 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 6.10.140.820 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
D | 6.10.140.820 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
B | 1.20.1440.200 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | Vps28 N-terminal domain | CATH (4.3.0) |
E | 1.20.1440.200 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | Vps28 N-terminal domain | CATH (4.3.0) |
C | 1.10.287.660 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix hairpin bin | CATH (4.3.0) |
F | 1.10.287.660 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix hairpin bin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09454 | Vps23 core domain (Vps23_core) | Vps23 core domain | ESCRT complexes form the main machinery driving protein sorting from endosomes to lysosomes. The core domain of the Vps23 subunit of the heterotrimeric ESCRT-I complex is a helical hairpin sandwiched in a fan-like formation between two other helical ... | Domain | |
PF03997 | VPS28 protein (VPS28) | VPS28 protein | - | Family | |
PF07200 | Modifier of rudimentary (Mod(r)) protein (Mod_r) | Modifier of rudimentary (Mod(r)) protein | This family represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acid ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR017916 | Steadiness box (SB) domain | Domain | |
IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
IPR008883 | Ubiquitin E2 variant, N-terminal | Domain | |
IPR037202 | ESCRT assembly domain | Homologous Superfamily | |
IPR037206 | VPS28, C-terminal domain superfamily | Homologous Superfamily | |
IPR007143 | Vacuolar protein sorting-associated Vps28 | Family | |
IPR017899 | Vacuolar protein sorting-associated, VPS28, C-terminal | Domain | |
IPR017898 | Vacuolar protein sorting-associated, VPS28, N-terminal | Domain | |
IPR038358 | VPS28, N-terminal domain superfamily | Homologous Superfamily | |
IPR037202 | ESCRT assembly domain | Homologous Superfamily | |
IPR017435 | ESCRT-1 complex, Vps37, fungi | Family | |
IPR009851 | Modifier of rudimentary, Modr | Domain | |
IPR029012 | Helix hairpin bin domain superfamily | Homologous Superfamily | |
IPR037202 | ESCRT assembly domain | Homologous Superfamily |