2ECY

Solution structure of the Zinc finger, C3HC4 type (RING finger)" domain of TNF receptor-associated factor 3

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF21363	e2ecyA1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: PF21363	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21363	TNF receptor-associated factor 2/3/5, RING domain (TRAF3_RING)	TNF receptor-associated factor 2/3/5, RING domain	This is the RING domain of TNF receptor-associated factors 2/3/5 (TRAFs2/3/5). The RING domain is common among ubiquitin E3 ligases and it is found at the N-terminal of TRAFs, followed by a series of zinc fingers and a C-terminal MATH/TRAF domain. Th ...	This is the RING domain of TNF receptor-associated factors 2/3/5 (TRAFs2/3/5). The RING domain is common among ubiquitin E3 ligases and it is found at the N-terminal of TRAFs, followed by a series of zinc fingers and a C-terminal MATH/TRAF domain. This domain, together with the zinc fingers, is required for ligase activity [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	TNF receptor-associated factor 3	thioesterase binding protein binding binding enzyme binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity protein phosphatase binding thioesterase binding protein binding binding enzyme binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity protein phosphatase binding phosphatase binding kinase binding protein kinase binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding identical protein binding	cellular response to stimulus positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus pattern recognition receptor signaling pathway response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface toll-like receptor signaling pathway cellular response to stimulus positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus pattern recognition receptor signaling pathway response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway regulation of biological process immune response response to other organism immune response-activating cell surface receptor signaling pathway regulation of innate immune response response to external stimulus regulation of response to stimulus defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus signaling positive regulation of biological process innate immune response activating cell surface receptor signaling pathway positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress innate immune response response to external biotic stimulus cell surface pattern recognition receptor signaling pathway positive regulation of innate immune response cell surface receptor signaling pathway defense response biological regulation defense response to symbiont immune system process toll-like receptor 4 signaling pathway cellular process organonitrogen compound metabolic process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process organic substance metabolic process regulation of proteolysis proteolysis metabolic process protein metabolic process macromolecule metabolic process regulation of metabolic process apoptotic process cell death programmed cell death regulation of apoptotic process regulation of programmed cell death Toll signaling pathway multicellular organismal process cellular biosynthetic process cytokine production organic substance biosynthetic process regulation of cytokine production regulation of multicellular organismal process regulation of interferon-beta production interferon-beta production regulation of biosynthetic process type I interferon production cellular metabolic process regulation of cellular metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of type I interferon production toll-like receptor signaling pathway TRIF-dependent toll-like receptor signaling pathway MyD88-independent toll-like receptor signaling pathway negative regulation of DNA-binding transcription factor activity RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process negative regulation of NF-kappaB transcription factor activity nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of molecular function nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of molecular function organic cyclic compound metabolic process regulation of DNA-binding transcription factor activity organic cyclic compound biosynthetic process regulation of DNA-templated transcription regulation of defense response to virus defense response to virus response to virus protein polyubiquitination protein K63-linked ubiquitination protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal response to organic substance response to cytokine cytokine-mediated signaling pathway cellular response to chemical stimulus cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus cellular response to organic substance response to tumor necrosis factor positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of type I interferon production positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of cytokine production positive regulation of cellular biosynthetic process regulation of signaling regulation of signal transduction intracellular signal transduction canonical NF-kappaB signal transduction regulation of intracellular signal transduction intracellular signaling cassette regulation of cell communication regulation of canonical NF-kappaB signal transduction interferon-mediated signaling pathway cellular response to type I interferon type I interferon-mediated signaling pathway response to type I interferon	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cell periphery protein-containing complex plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cell periphery protein-containing complex plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane protein complex CD40 receptor complex receptor complex cytosol endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle protein kinase complex transferase complex, transferring phosphorus-containing groups catalytic complex serine/threonine protein kinase complex transferase complex endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane ubiquitin ligase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR012227	TNF receptor-associated factor TRAF, metazoa	Family
A	IPR001293	Zinc finger, TRAF-type	Domain
A	IPR002083	MATH/TRAF domain	Domain
A	IPR049342	TRAF1-6/MEP1A/B-like, MATH domain	Domain
A	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A	IPR027128	TNF receptor-associated factor 3, C3HC3D-type RING zinc finger	Domain
A	IPR049440	TNF receptor-associated factor 3/5, RING domain	Domain
A	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A	IPR037304	TNF receptor-associated factor 3, MATH domain	Domain
A	IPR001841	Zinc finger, RING-type	Domain
A	IPR008974	TRAF-like	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q13114	herpes simplex encephalitis, susceptibility to, 3 allergic rhinitis glioblastoma herpes simplex encephalitis, susceptibility to, 1 Herpetic meningoencephalitis medulloblastoma psoriasis tuberculosis attention deficit hyperactivity disorder, inattentive type lung cancer osteosarcoma Sjogren syndrome gastric carcinoma herpes simplex encephalitis malignant glioma herpes simplex encephalitis, susceptibility to, 3 allergic rhinitis glioblastoma herpes simplex encephalitis, susceptibility to, 1 Herpetic meningoencephalitis medulloblastoma psoriasis tuberculosis attention deficit hyperactivity disorder, inattentive type lung cancer osteosarcoma Sjogren syndrome gastric carcinoma herpes simplex encephalitis malignant glioma ovarian cancer subependymal giant cell astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.