2CZV
Crystal structure of archeal RNase P protein ph1481p in complex with ph1877p
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2czva_ | Alpha and beta proteins (a/b) | 7-stranded beta/alpha barrel | PHP domain-like | RNase P subunit p30 | Ribonuclease P protein component 3, Rnp3 | (Pyrococcus horikoshii ) [TaxId: 53953 ], | SCOPe (2.08) |
B | d2czvb_ | Alpha and beta proteins (a/b) | 7-stranded beta/alpha barrel | PHP domain-like | RNase P subunit p30 | Ribonuclease P protein component 3, Rnp3 | (Pyrococcus horikoshii ) [TaxId: 53953 ], | SCOPe (2.08) |
C | d2czvc1 | Alpha and beta proteins (a+b) | Ferredoxin-like | Rnp2-like | Rpp14/Pop5-like | RNase P protein component 2, Rnp2 | (Pyrococcus horikoshii ) [TaxId: 53953 ], | SCOPe (2.08) |
D | d2czvd_ | Alpha and beta proteins (a+b) | Ferredoxin-like | Rnp2-like | Rpp14/Pop5-like | RNase P protein component 2, Rnp2 | (Pyrococcus horikoshii ) [TaxId: 53953 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PHP domain-like | 8041184 | 3000312 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PHP domain-like | 8041184 | 3000312 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Rpp14/Pop5-like | 8020406 | 4001975 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Rnp2-like | 8032786 | 3000630 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Rnp2-like | 8032786 | 3000630 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01876 | e2czvA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01876 | ECOD (1.6) |
B | PF01876 | e2czvB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01876 | ECOD (1.6) |
C | PF01900 | e2czvC1 | A: a+b two layers | X: Alpha-beta plaits | H: Rpp14/Pop5-like (From Topology) | T: Rpp14/Pop5-like | F: PF01900 | ECOD (1.6) |
D | PF01900 | e2czvD1 | A: a+b two layers | X: Alpha-beta plaits | H: Rpp14/Pop5-like (From Topology) | T: Rpp14/Pop5-like | F: PF01900 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (4.3.0) |
B | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (4.3.0) |
C | 3.30.70.3250 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Ribonuclease P, Pop5 subunit | CATH (4.3.0) |
D | 3.30.70.3250 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Ribonuclease P, Pop5 subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01876 | RNase P subunit p30 (RNase_P_p30) | RNase P subunit p30 | This protein is part of the RNase P complex that is involved in tRNA maturation [1]. | Domain | |
PF01900 | Rpp14/Pop5 family (RNase_P_Rpp14) | Rpp14/Pop5 family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016195 | Polymerase/histidinol phosphatase-like | Homologous Superfamily | |
IPR023539 | Ribonuclease P, protein component 3, archaeal | Family | |
IPR002738 | RNase P subunit p30 | Family | |
IPR002759 | RNase P subunit Pop5/Rpp14/Rnp2-like | Family | |
IPR016434 | Ribonuclease P protein subunit Rnp2, archaea | Family | |
IPR038085 | RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily | Homologous Superfamily |