2C1W
The structure of XendoU: a splicing independent snoRNA processing endoribonuclease
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2c1wa1 | Alpha and beta proteins (a+b) | EndoU-like | EndoU-like | Eukaryotic EndoU ribonuclease | EndoU | AFRICAN CLAWED FROG (Xenopus laevis ) [TaxId: 8355 ], | SCOPe (2.08) |
B | d2c1wb_ | Alpha and beta proteins (a+b) | EndoU-like | EndoU-like | Eukaryotic EndoU ribonuclease | automated matches | AFRICAN CLAWED FROG (Xenopus laevis ) [TaxId: 8355 ], | SCOPe (2.08) |
C | d2c1wc_ | Alpha and beta proteins (a+b) | EndoU-like | EndoU-like | Eukaryotic EndoU ribonuclease | automated matches | AFRICAN CLAWED FROG (Xenopus laevis ) [TaxId: 8355 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | EndoU-like | 8039090 | 3000687 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Eukaryotic EndoU ribonuclease | 8026711 | 4003360 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | EndoU-like | 8039090 | 3000687 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | EndoU-like | 8039090 | 3000687 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | XendoU | e2c1wA1 | A: a+b complex topology | X: RNase A-like | H: EndoU-like (From Topology) | T: EndoU-like | F: XendoU | ECOD (1.6) |
B | XendoU | e2c1wB1 | A: a+b complex topology | X: RNase A-like | H: EndoU-like (From Topology) | T: EndoU-like | F: XendoU | ECOD (1.6) |
C | XendoU | e2c1wC1 | A: a+b complex topology | X: RNase A-like | H: EndoU-like (From Topology) | T: EndoU-like | F: XendoU | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09412 | Endoribonuclease XendoU (XendoU) | Endoribonuclease XendoU | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037227 | Endoribonuclease EndoU-like | Homologous Superfamily | |
IPR039787 | Poly(U)-specific endoribonuclease | Family | |
IPR018998 | EndoU ribonuclease, C-terminal | Domain |