1Z1G
Crystal structure of a lambda integrase tetramer bound to a Holliday junction
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
I [auth A] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | DNA-binding domain | 8035081 | 3000183 | SCOP2B (2022-06-29) |
L [auth D] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2022-06-29) |
L [auth D] | SCOP2B Superfamily | DNA-binding domain | 8035081 | 3000183 | SCOP2B (2022-06-29) |
L [auth D] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2B (2022-06-29) |
J [auth B] | SCOP2B Superfamily | DNA-binding domain | 8035081 | 3000183 | SCOP2B (2022-06-29) |
J [auth B] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2022-06-29) |
J [auth B] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | DNA-binding domain | 8035081 | 3000183 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I [auth A] | Phage_integrase_C | e1z1gA7 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
I [auth A] | Phage_integrase_N_1 | e1z1gA5 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N_1 | ECOD (1.6) |
I [auth A] | Phage_int_SAM_3 | e1z1gA6 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_3 | ECOD (1.6) |
I [auth A] | Arm-DNA-bind_1 | e1z1gA8 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: Arm-DNA-bind_1 | ECOD (1.6) |
L [auth D] | Phage_integrase_N_1 | e1z1gD5 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N_1 | ECOD (1.6) |
L [auth D] | UNK_F_TYPE | e1z1gD7 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: UNK_F_TYPE | ECOD (1.6) |
L [auth D] | Phage_int_SAM_3 | e1z1gD6 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_3 | ECOD (1.6) |
L [auth D] | Arm-DNA-bind_1 | e1z1gD8 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: Arm-DNA-bind_1 | ECOD (1.6) |
J [auth B] | Phage_integrase_N_1 | e1z1gB5 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N_1 | ECOD (1.6) |
J [auth B] | UNK_F_TYPE | e1z1gB7 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: UNK_F_TYPE | ECOD (1.6) |
J [auth B] | Phage_int_SAM_3 | e1z1gB6 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_3 | ECOD (1.6) |
J [auth B] | Arm-DNA-bind_1 | e1z1gB8 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: Arm-DNA-bind_1 | ECOD (1.6) |
K [auth C] | Phage_integrase_C | e1z1gC7 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
K [auth C] | Phage_integrase_N_1 | e1z1gC5 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N_1 | ECOD (1.6) |
K [auth C] | Phage_int_SAM_3 | e1z1gC6 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_3 | ECOD (1.6) |
K [auth C] | Arm-DNA-bind_1 | e1z1gC8 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: Arm-DNA-bind_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
I [auth A], J [auth B], K [auth C], L [auth D] | PF09003 | Bacteriophage lambda integrase, Arm DNA-binding domain (Arm-DNA-bind_1) | Bacteriophage lambda integrase, Arm DNA-binding domain | The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA- ... | Domain |
I [auth A], J [auth B], K [auth C], L [auth D] | PF00589 | Phage integrase family (Phage_integrase) | Phage integrase family | - | Family |
I [auth A], J [auth B], K [auth C], L [auth D] | PF02899 | Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1) | Phage integrase, N-terminal SAM-like domain | - | Domain |