1YKH
Structure of the mediator MED7/MED21 (Med7/Srb7) subcomplex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d1ykhb1 | All alpha proteins | Mediator hinge subcomplex-like | Mediator hinge subcomplex-like | CSE2-like | RNA polymerase II holoenzyme component SRB7 (MED21) | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
A | d1ykha_ | All alpha proteins | Mediator hinge subcomplex-like | Mediator hinge subcomplex-like | MED7 hinge region | automated matches | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Med9-like | 8022274 | 4001451 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Mediator subcomplex-like | 8034654 | 3001613 | SCOP2 (2022-06-29) |
A | SCOP2 Family | MED7 hinge region | 8022272 | 4001454 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Mediator subcomplex-like | 8034652 | 3001613 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF11221 | e1ykhB1 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: RNA polymerase II holoenzyme component SRB7 (MED21) | F: PF11221 | ECOD (1.6) |
A | PF05983 | e1ykhA1 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: MED7 hinge region | F: PF05983 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 6.10.280.10 | Special | Helix non-globular | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
A | 6.10.140.200 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11221 | Subunit 21 of Mediator complex (Med21) | Subunit 21 of Mediator complex | - | Family | |
PF05983 | MED7 protein (Med7) | MED7 protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037212 | Mediator complex, subunit Med7/Med21-like | Homologous Superfamily | |
IPR021384 | Mediator complex, subunit Med21 | Family | |
IPR037212 | Mediator complex, subunit Med7/Med21-like | Homologous Superfamily | |
IPR009244 | Mediator complex, subunit Med7 | Family | |
IPR044888 | Mediator complex, subunit Med7 superfmaily | Homologous Superfamily |