1Y19

Structural basis for phosphatidylinositol phosphate kinase type I-gamma binding to talin at focal adhesions

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1y19b1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d1y19b2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d1y19d1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d1y19d2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
F	d1y19f1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
F	d1y19f2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
H	d1y19h1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
H	d1y19h2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
J	d1y19j1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
J	d1y19j2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
L	d1y19l1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
L	d1y19l2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	FERM domain-like	8031876	4000747	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	FERM central domain-like	8044254	3001227	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	PH domain-like	8044255	3000134	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	IRS_1	e1y19B1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: IRS_1	ECOD (1.6)
B	FERM_M	e1y19B2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
D	IRS_1	e1y19D1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: IRS_1	ECOD (1.6)
D	FERM_M	e1y19D2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
F	IRS_1	e1y19F1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: IRS_1	ECOD (1.6)
F	FERM_M	e1y19F2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
H	IRS_1	e1y19H1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: IRS_1	ECOD (1.6)
H	FERM_M	e1y19H2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
J	IRS_1	e1y19J1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: IRS_1	ECOD (1.6)
J	FERM_M	e1y19J2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
L	IRS_1	e1y19L1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: IRS_1	ECOD (1.6)
L	FERM_M	e1y19L2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
D	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
D	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
F	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
F	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
H	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
H	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
J	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
J	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
L	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
L	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I A, C, E, G, I, K	Phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	1-phosphatidylinositol-4-phosphate 5-kinase activity phosphatidylinositol kinase activity kinase activity lipid kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding 1-phosphatidylinositol-4-phosphate 5-kinase activity phosphatidylinositol kinase activity kinase activity lipid kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport cellular biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process phospholipid metabolic process organic substance metabolic process organic substance biosynthetic process localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport cellular biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process phospholipid metabolic process organic substance metabolic process organic substance biosynthetic process phosphate-containing compound metabolic process phosphorus metabolic process phosphatidylinositol metabolic process glycerophospholipid biosynthetic process cellular metabolic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phosphatidylinositol biosynthetic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process cellular lipid metabolic process metabolic process glycerolipid metabolic process lipid metabolic process multicellular organismal process regulation of body fluid levels wound healing response to stimulus homotypic cell-cell adhesion cell activation hemostasis biological regulation platelet aggregation blood coagulation cell adhesion cell-cell adhesion response to stress coagulation regulation of biological quality response to wounding platelet activation regulation of localization cellular localization regulation of cellular process regulation of cellular component organization synaptic vesicle cycle regulation of synaptic vesicle recycling presynaptic endocytosis vesicle-mediated transport in synapse cellular component organization synaptic vesicle recycling regulation of synaptic vesicle endocytosis establishment of localization in cell cellular component organization or biogenesis regulation of endocytosis synaptic vesicle endocytosis regulation of biological process regulation of transport regulation of vesicle-mediated transport axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development chemotaxis taxis response to chemical response to external stimulus locomotion phosphorylation secretion by cell exocytosis secretion export from cell receptor internalization postsynaptic neurotransmitter receptor internalization regulation of receptor internalization regulation of postsynaptic neurotransmitter receptor internalization regulation of receptor-mediated endocytosis protein-containing complex localization neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis receptor-mediated endocytosis	anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction presynaptic endocytic zone synapse membrane plasma membrane presynaptic membrane synaptic membrane cell periphery presynapse presynaptic endocytic zone membrane anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction presynaptic endocytic zone synapse membrane plasma membrane presynaptic membrane synaptic membrane cell periphery presynapse presynaptic endocytic zone membrane plasma membrane region ruffle cell leading edge leading edge membrane plasma membrane bounded cell projection cell projection ruffle membrane cell projection membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen glutamatergic synapse cell-cell junction adherens junction uropod cell trailing edge postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse endosome membrane endosome intracellular vesicle endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle vesicle organelle membrane phagocytic cup
B, D, F, H, J B, D, F, H, J, L	Talin 1	binding phospholipid binding lipid binding phosphatidylinositol binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding actin filament binding LIM domain binding protein domain specific binding vinculin binding cell adhesion molecule binding integrin binding binding phospholipid binding lipid binding phosphatidylinositol binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding actin filament binding LIM domain binding protein domain specific binding vinculin binding cell adhesion molecule binding integrin binding signaling receptor binding structural constituent of cytoskeleton structural molecule activity modified amino acid binding phosphatidylserine binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process integrin activation cellular component organization or biogenesis cellular response to stimulus regulation of biological process integrin-mediated signaling pathway regulation of cellular process cell surface receptor signaling pathway response to stimulus cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process integrin activation cellular component organization or biogenesis cellular response to stimulus regulation of biological process integrin-mediated signaling pathway regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication signal transduction cell junction organization cell junction assembly cell-substrate junction assembly cell-substrate junction organization organelle organization actin cytoskeleton organization cortical actin cytoskeleton organization cortical cytoskeleton organization actin filament-based process cytoskeleton organization cell adhesion cell-cell adhesion	anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction ruffle cell leading edge plasma membrane membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction ruffle cell leading edge plasma membrane membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane plasma membrane region cell projection membrane cell surface intracellular anatomical structure cytoplasm cell-cell junction adherens junction intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K	IPR027483	Phosphatidylinositol-4-phosphate 4/5-kinase, C-terminal domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR002498	Phosphatidylinositol-4-phosphate 4/5-kinase, core	Domain
A, C, E, G, I A, C, E, G, I, K	IPR027484	Phosphatidylinositol-4-phosphate 5-kinase, N-terminal	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR023610	Phosphatidylinositol-4/5-phosphate 5/4-kinase	Family
B, D, F, H, J B, D, F, H, J, L	IPR000299	FERM domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR019748	FERM central domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR015009	Vinculin-binding site-containing domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR032425	Talin, N-terminal F0 domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR011993	PH-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR035964	I/LWEQ domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR015224	Talin, central	Domain
B, D, F, H, J B, D, F, H, J, L	IPR019749	Band 4.1 domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR035963	FERM superfamily, second domain	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR036476	Talin, central domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR036723	Alpha-catenin/vinculin-like superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR002558	I/LWEQ domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR019747	FERM conserved site	Conserved Site
B, D, F, H, J B, D, F, H, J, L	IPR049108	Talin, R4 domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR037438	Talin-1/2, rod-segment	Domain